Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0507
(720 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 157 9e-39
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 141 4e-34
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 141 4e-34
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 117 7e-27
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 114 5e-26
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 114 6e-26
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 101 4e-22
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 101 4e-22
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 101 4e-22
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 93 2e-19
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 87 1e-17
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 81 5e-16
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 75 6e-14
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 74 8e-14
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 66 2e-11
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 65 5e-11
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 63 2e-10
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 62 4e-10
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 62 4e-10
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 61 6e-10
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 61 8e-10
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 60 1e-09
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 59 3e-09
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 57 1e-08
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 57 1e-08
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 57 1e-08
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 56 3e-08
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 54 7e-08
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 53 2e-07
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 53 2e-07
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 52 4e-07
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 52 5e-07
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 51 7e-07
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 50 1e-06
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 50 1e-06
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 49 3e-06
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 49 3e-06
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 49 3e-06
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 48 8e-06
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 48 8e-06
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 48 8e-06
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 47 1e-05
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 47 1e-05
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 46 3e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 45 4e-05
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 45 4e-05
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 45 6e-05
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 44 1e-04
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 40 0.001
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 40 0.001
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 40 0.002
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 39 0.003
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 39 0.004
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 38 0.005
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 37 0.015
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 35 0.047
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 35 0.047
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 34 0.082
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 34 0.11
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 33 0.25
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 32 0.33
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 32 0.44
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa... 31 0.77
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 31 1.0
At1g13810.1 68414.m01621 expressed protein ; expression supporte... 30 1.3
At2g25460.1 68415.m03049 expressed protein 29 2.3
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 29 2.3
At5g52530.2 68418.m06518 dentin sialophosphoprotein-related cont... 28 5.4
At5g52530.1 68418.m06517 dentin sialophosphoprotein-related cont... 28 5.4
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 28 5.4
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 28 5.4
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ... 27 9.5
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 157 bits (380), Expect = 9e-39
Identities = 67/122 (54%), Positives = 87/122 (71%)
Frame = +3
Query: 258 DXXSLQPFNKNFYDPHPTVLKXSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQ 437
D L PF KNFY P V + EVEEYR E+TV G ++ P++ F + FPDYV
Sbjct: 52 DLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVL 111
Query: 438 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRXGD 617
+ VK G+ EPTPIQ+QGWP+AM G++L+G+A+TGSGKTL+Y+LPAIVH+N QP + GD
Sbjct: 112 EEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGD 171
Query: 618 GP 623
GP
Sbjct: 172 GP 173
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +2
Query: 641 APTRELAQQIQQVAAGF 691
APTRELA QIQQ A+ F
Sbjct: 179 APTRELAVQIQQEASKF 195
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 141 bits (342), Expect = 4e-34
Identities = 59/125 (47%), Positives = 89/125 (71%)
Frame = +3
Query: 249 PDWDXXSLQPFNKNFYDPHPTVLKXSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 428
P + +L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 429 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIR 608
+ + + +G+ EPTPIQAQGWP+A+ G++L+G+A+TGSGKTLAY+LPA+VH++ QP +
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLG 234
Query: 609 XGDGP 623
DGP
Sbjct: 235 QDDGP 239
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 141 bits (342), Expect = 4e-34
Identities = 59/125 (47%), Positives = 89/125 (71%)
Frame = +3
Query: 249 PDWDXXSLQPFNKNFYDPHPTVLKXSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 428
P + +L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 429 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIR 608
+ + + +G+ EPTPIQAQGWP+A+ G++L+G+A+TGSGKTLAY+LPA+VH++ QP +
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLG 234
Query: 609 XGDGP 623
DGP
Sbjct: 235 QDDGP 239
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 117 bits (282), Expect = 7e-27
Identities = 48/124 (38%), Positives = 78/124 (62%)
Frame = +3
Query: 252 DWDXXSLQPFNKNFYDPHPTVLKXSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 431
D +P NK+FY+ ++ + E +YR + + VSG +VH P++ FE+ F
Sbjct: 179 DHSSIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQ 238
Query: 432 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRX 611
+ +K Y++PT IQ Q PI +SG++++G+A+TGSGKT A++LP IVHI +QP ++
Sbjct: 239 IMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQR 298
Query: 612 GDGP 623
+GP
Sbjct: 299 DEGP 302
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 114 bits (275), Expect = 5e-26
Identities = 51/124 (41%), Positives = 75/124 (60%)
Frame = +3
Query: 252 DWDXXSLQPFNKNFYDPHPTVLKXSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 431
D +PF KNFY + + + V YR + E+ V G +V PIQ++ +
Sbjct: 347 DHSKIEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSK 406
Query: 432 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRX 611
+ +K + Y++P PIQAQ PI MSG++ +GVA+TGSGKTL ++LP + HI +QPP+
Sbjct: 407 ILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEA 466
Query: 612 GDGP 623
GDGP
Sbjct: 467 GDGP 470
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 114 bits (274), Expect = 6e-26
Identities = 50/124 (40%), Positives = 75/124 (60%)
Frame = +3
Query: 252 DWDXXSLQPFNKNFYDPHPTVLKXSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 431
D +PF KNFY + + + EV YR + E+ V G +V PI+++ +
Sbjct: 480 DHSKIEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSK 539
Query: 432 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRX 611
+ +K + Y++P PIQ Q PI MSG++ +GVA+TGSGKTL ++LP + HI +QPP+
Sbjct: 540 ILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEA 599
Query: 612 GDGP 623
GDGP
Sbjct: 600 GDGP 603
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 101 bits (243), Expect = 4e-22
Identities = 44/96 (45%), Positives = 62/96 (64%)
Frame = +3
Query: 300 PHPTVLKXSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 479
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 480 QAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI 587
QAQ WPIAM G+++V +A+TGSGKTL Y++P +H+
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHL 220
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 101 bits (243), Expect = 4e-22
Identities = 44/96 (45%), Positives = 62/96 (64%)
Frame = +3
Query: 300 PHPTVLKXSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 479
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 480 QAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI 587
QAQ WPIAM G+++V +A+TGSGKTL Y++P +H+
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHL 220
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 101 bits (243), Expect = 4e-22
Identities = 44/96 (45%), Positives = 62/96 (64%)
Frame = +3
Query: 300 PHPTVLKXSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 479
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 480 QAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI 587
QAQ WPIAM G+++V +A+TGSGKTL Y++P +H+
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHL 220
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 92.7 bits (220), Expect = 2e-19
Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 4/104 (3%)
Frame = +3
Query: 282 NKNFYDPH----PTVLKXSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 449
NK+ PH P V SP E+ YR +HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 450 TMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIV 581
+ G+ PTPIQAQ WPIA+ +++V +A+TGSGKTL Y++PA +
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFI 495
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 87.0 bits (206), Expect = 1e-17
Identities = 42/114 (36%), Positives = 69/114 (60%), Gaps = 3/114 (2%)
Frame = +3
Query: 291 FYDPHPTVLKXSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 470
++ P V K S +++ R + +TV+G ++ PI+ F + FP + + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 471 TPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQP---PIRXGDGP 623
TPIQ QG P+ +SG++++G+A TGSGKTL ++LP I+ + PI G+GP
Sbjct: 121 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGP 174
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 81.4 bits (192), Expect = 5e-16
Identities = 40/113 (35%), Positives = 67/113 (59%), Gaps = 3/113 (2%)
Frame = +3
Query: 294 YDPHPTVLKXSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 473
+ P + K S + + R + + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 474 PIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQP---PIRXGDGP 623
PIQ QG P+ ++G++++G+A TGSGKTL ++LP I+ + PI G+GP
Sbjct: 171 PIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGP 223
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 74.5 bits (175), Expect = 6e-14
Identities = 37/87 (42%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Frame = +3
Query: 333 EVEEYRNKHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 506
E E + K VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 507 SGKNLVGVAQTGSGKTLAYILPAIVHI 587
G++L+G+A+TGSGKTLA+ +PAI+H+
Sbjct: 150 DGRDLIGIAKTGSGKTLAFGIPAIMHV 176
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 74.1 bits (174), Expect = 8e-14
Identities = 28/87 (32%), Positives = 55/87 (63%)
Frame = +3
Query: 345 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 524
+R ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 525 GVAQTGSGKTLAYILPAIVHINNQPPI 605
G+A+TGSGKT A++LP + +I+ PP+
Sbjct: 355 GIAETGSGKTAAFVLPMLAYISRLPPM 381
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 66.5 bits (155), Expect = 2e-11
Identities = 25/48 (52%), Positives = 37/48 (77%)
Frame = +3
Query: 444 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI 587
V + G+ P+PIQAQ WPIAM +++V +A+TGSGKTL Y++P +H+
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHL 291
Score = 33.1 bits (72), Expect = 0.19
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 339 EEYRNKHEVTVSGVEVHNPIQYFEEANFPD 428
E Y KHE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 64.9 bits (151), Expect = 5e-11
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = +3
Query: 348 RNKHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 515
R ++ + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 516 NLVGVAQTGSGKTLAYILPAIVHI 587
A TGSGKT A+I P ++ +
Sbjct: 180 ECFACAPTGSGKTFAFICPMLIKL 203
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 63.3 bits (147), Expect = 2e-10
Identities = 33/78 (42%), Positives = 47/78 (60%)
Frame = +3
Query: 366 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGS 545
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L A TGS
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGS 215
Query: 546 GKTLAYILPAIVHINNQP 599
GKT A+ LP + + +P
Sbjct: 216 GKTAAFALPTLERLLFRP 233
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 62.1 bits (144), Expect = 4e-10
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Frame = +3
Query: 324 SPYEVEEYRNKHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 497
S ++ + R K ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 498 IAMSGKNLVGVAQTGSGKTLAYILPAI 578
A++GK+L+ A TGSGKT ++++P I
Sbjct: 143 AALTGKSLLASADTGSGKTASFLVPII 169
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 62.1 bits (144), Expect = 4e-10
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Frame = +3
Query: 237 NMRRPDWDXXS--LQPFNKNFYDPHPTVLKXSPYEVE-EYRNKHEVTVSGVEVHNPIQYF 407
N R WD + PF + +P P + + + + SG V P+ F
Sbjct: 102 NNRSGGWDRREREVNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTF 161
Query: 408 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 578
E + + + ++ Y +PTP+Q PI + G++L+ AQTGSGKT A+ P I
Sbjct: 162 AEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPII 218
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 61.3 bits (142), Expect = 6e-10
Identities = 27/66 (40%), Positives = 40/66 (60%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 584
FE N V +K GYK PTPIQ + P+ +SG ++V +A+TGSGKT A+++P +
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 585 INNQPP 602
+ P
Sbjct: 90 LKQHVP 95
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 60.9 bits (141), Expect = 8e-10
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Frame = +3
Query: 237 NMRRPDWDXXSLQ--PF-NKNFYDPHPTVLKXSPYEVEEYRNKHEVTVSGVEVHNPIQYF 407
N R WD + PF N DP + + E Y + + SG V P+ F
Sbjct: 90 NARSGGWDRRDTETNPFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTF 148
Query: 408 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 578
E + + + ++ Y +PTP+Q PI +G++L+ AQTGSGKT A+ P I
Sbjct: 149 AEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPII 205
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 60.5 bits (140), Expect = 1e-09
Identities = 32/102 (31%), Positives = 54/102 (52%)
Frame = +3
Query: 273 QPFNKNFYDPHPTVLKXSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 452
+P K T K EVE+ + ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 453 MGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 578
MG+ T IQA+ P M G++++G A+TGSGKTLA+++PA+
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 58.8 bits (136), Expect = 3e-09
Identities = 33/82 (40%), Positives = 45/82 (54%)
Frame = +3
Query: 333 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 512
EVEE RN E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 513 KNLVGVAQTGSGKTLAYILPAI 578
K++V A+TGSGKTLAY+LP +
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLL 105
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 57.2 bits (132), Expect = 1e-08
Identities = 24/66 (36%), Positives = 43/66 (65%)
Frame = +3
Query: 381 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLA 560
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++G+AQTGSGKT A
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGA 62
Query: 561 YILPAI 578
+ +P +
Sbjct: 63 FAIPIL 68
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 56.8 bits (131), Expect = 1e-08
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Frame = +3
Query: 237 NMRRPDWDXXS--LQPFNKNF-YDPHPTVLKXSPYEVEEYRNKHEVTVSGVEVHNPIQYF 407
N R WD + PF + +P T + + + Y + V SG +V P+ F
Sbjct: 95 NNRSGGWDRREREVNPFGDDAELEPVFTEQENTGINFDAYEDI-PVETSGGDVPPPVNTF 153
Query: 408 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 578
+ + D + ++ Y PTP+Q PI ++ ++L+ AQTGSGKT A+ P I
Sbjct: 154 ADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPII 210
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 56.8 bits (131), Expect = 1e-08
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Frame = +3
Query: 237 NMRRPDWDXXS--LQPFNKNF-YDPHPTVLKXSPYEVEEYRNKHEVTVSGVEVHNPIQYF 407
N R WD + PF + +P T + + + Y + V SG +V P+ F
Sbjct: 95 NNRSGGWDRREREVNPFGDDAELEPVFTEQENTGINFDAYEDI-PVETSGGDVPPPVNTF 153
Query: 408 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 578
+ + D + ++ Y PTP+Q PI ++ ++L+ AQTGSGKT A+ P I
Sbjct: 154 ADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPII 210
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 55.6 bits (128), Expect = 3e-08
Identities = 23/65 (35%), Positives = 40/65 (61%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 584
FE ++ + K +G ++PTP+Q P ++G++++G+AQTGSGKT A+ LP +
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHR 119
Query: 585 INNQP 599
+ P
Sbjct: 120 LAEDP 124
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 54.4 bits (125), Expect = 7e-08
Identities = 22/50 (44%), Positives = 35/50 (70%)
Frame = +3
Query: 453 MGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPP 602
MG++ PT +QAQ P+ +SG++++ A TG+GKT+AY+ P I H+ P
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSP 97
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 53.2 bits (122), Expect = 2e-07
Identities = 32/96 (33%), Positives = 51/96 (53%)
Frame = +3
Query: 312 VLKXSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQG 491
V S E ++ K ++ V VEV NP + +++ +K G + PIQA
Sbjct: 68 VKSDSSSEKKKSSKKVKLGVEDVEVDNP-NAVSKFRISAPLREKLKANGIEALFPIQAST 126
Query: 492 WPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQP 599
+ + + G +LVG A+TG GKTLA++LP + + N P
Sbjct: 127 FDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGP 162
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 53.2 bits (122), Expect = 2e-07
Identities = 21/67 (31%), Positives = 43/67 (64%)
Frame = +3
Query: 396 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 575
++ F + D ++G+K Y + T +Q+ P A+ G++++G A+TGSGKTLA+++P
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPI 129
Query: 576 IVHINNQ 596
+ ++ +
Sbjct: 130 LEKLHRE 136
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/81 (29%), Positives = 47/81 (58%)
Frame = +3
Query: 336 VEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 515
+E+ ++ + + G + + F+ + + +K MG++ T IQA + GK
Sbjct: 69 MEDGEDEKNIVIVGKGIMTNVT-FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGK 127
Query: 516 NLVGVAQTGSGKTLAYILPAI 578
+++G A+TGSGKTLA+++PA+
Sbjct: 128 DVLGAARTGSGKTLAFLIPAV 148
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 51.6 bits (118), Expect = 5e-07
Identities = 24/61 (39%), Positives = 35/61 (57%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 584
FEE PD + ++ G+ PT +Q+ P + G + V + TGSGKTLAY+LP +
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSE 171
Query: 585 I 587
I
Sbjct: 172 I 172
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 51.2 bits (117), Expect = 7e-07
Identities = 21/66 (31%), Positives = 40/66 (60%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 584
F++ +G++ G+K T +Q P+ + GK+++ A+TG+GKT+A++LP+I
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 585 INNQPP 602
+ PP
Sbjct: 142 VIKAPP 147
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/55 (38%), Positives = 36/55 (65%)
Frame = +3
Query: 438 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPP 602
+ +K GY+ T +Q PI + GK+++ A+TG+GKT+A++LP+I + PP
Sbjct: 67 KAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPP 121
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/55 (38%), Positives = 36/55 (65%)
Frame = +3
Query: 438 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPP 602
+ +K G++ T +Q PI + GK+++ A+TG+GKT+A++LPAI + PP
Sbjct: 395 KAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPP 449
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/61 (37%), Positives = 36/61 (59%)
Frame = +3
Query: 396 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 575
++ F+E + V ++ + + PT IQ G P M K++V + TGSGKTLAY+LP
Sbjct: 111 VENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPI 170
Query: 576 I 578
+
Sbjct: 171 V 171
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/62 (32%), Positives = 39/62 (62%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 584
FE+ + G+ G++ P+PIQ + PIA++G++++ A+ G+GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 585 IN 590
I+
Sbjct: 193 ID 194
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/62 (32%), Positives = 39/62 (62%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 584
FE+ + G+ G++ P+PIQ + PIA++G++++ A+ G+GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 585 IN 590
I+
Sbjct: 193 ID 194
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 47.6 bits (108), Expect = 8e-06
Identities = 20/62 (32%), Positives = 40/62 (64%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 584
FE+ + +G+ G+++P+PIQ + PIA++G +++ A+ G+GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 585 IN 590
I+
Sbjct: 186 ID 187
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 47.6 bits (108), Expect = 8e-06
Identities = 20/62 (32%), Positives = 40/62 (64%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 584
FE+ + +G+ G+++P+PIQ + PIA++G +++ A+ G+GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 585 IN 590
I+
Sbjct: 186 ID 187
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 47.6 bits (108), Expect = 8e-06
Identities = 20/62 (32%), Positives = 40/62 (64%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 584
FE+ + +G+ G+++P+PIQ + PIA++G +++ A+ G+GKT A+ +P +
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 585 IN 590
I+
Sbjct: 216 ID 217
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/58 (37%), Positives = 35/58 (60%)
Frame = +3
Query: 423 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ 596
P+++ ++ +G+ PT IQ + P +G++ + AQTGSGKTL Y+L IN Q
Sbjct: 84 PEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQ 141
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/70 (34%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Frame = +3
Query: 393 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT--LAYI 566
PI+ F++ D V +GV GYK+P+ IQ + + G++++ AQ+G+GKT +A
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAIS 79
Query: 567 LPAIVHINNQ 596
+ IV+I+++
Sbjct: 80 VCQIVNISSR 89
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/50 (42%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Frame = +3
Query: 432 VQQGVKTMGYKEPTPIQAQGWPIAM-SGKNLVGVAQTGSGKTLAYILPAI 578
+ + + + +KEPT IQ + +A GK+++G A+TGSGKTLA+ LP +
Sbjct: 201 LMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPIL 250
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 45.2 bits (102), Expect = 4e-05
Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Frame = +3
Query: 456 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI---NNQPP 602
G++ TP+QA+ P S K++V A TGSGKTLA++LP I I N+ PP
Sbjct: 35 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 86
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 45.2 bits (102), Expect = 4e-05
Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Frame = +3
Query: 456 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI---NNQPP 602
G++ TP+QA+ P S K++V A TGSGKTLA++LP I I N+ PP
Sbjct: 36 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 87
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 44.8 bits (101), Expect = 6e-05
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 584
F E + + + +K + P IQA + + GK+ + Q+GSGKTLAY++P I
Sbjct: 376 FAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQR 435
Query: 585 INNQ 596
+ +
Sbjct: 436 LREE 439
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/56 (37%), Positives = 32/56 (57%)
Frame = +3
Query: 426 DYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINN 593
D V ++ G+ P+ QA P +SGK+++ A+TGSGKT Y+ P I + N
Sbjct: 89 DNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTN 144
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/49 (38%), Positives = 32/49 (65%)
Frame = +3
Query: 432 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 578
+ + +K G ++ PIQ AM G++++G A+TG+GKTLA+ +P I
Sbjct: 127 IVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 175
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/63 (31%), Positives = 36/63 (57%)
Frame = +3
Query: 366 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGS 545
T G+E PI F + + V +GV G+++P+ IQ + + G++++ AQ+G+
Sbjct: 27 TTDGIE---PITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGT 83
Query: 546 GKT 554
GKT
Sbjct: 84 GKT 86
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/49 (36%), Positives = 32/49 (65%)
Frame = +3
Query: 432 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 578
+ + + + G ++ PIQ AM G++++G A+TG+GKTLA+ +P I
Sbjct: 115 IVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 163
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/79 (29%), Positives = 41/79 (51%)
Frame = +3
Query: 417 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ 596
+ P +++ ++ G PIQ A+ G++++ A+TG+GKTLA+ +P I + +
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167
Query: 597 PPIRXGDGPDCFGLGRLPE 653
GD GRLP+
Sbjct: 168 ----AGDYTAFRRSGRLPK 182
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 38.7 bits (86), Expect = 0.004
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Frame = +3
Query: 333 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT-MGYKEPTPIQAQGWPIAMS 509
E E N VT SG + FE+ N + +G+ M +++P+ IQA P+ M+
Sbjct: 70 EEPEDSNIKAVT-SGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMT 128
Query: 510 --GKNLVGVAQTGSGKTLAYILPAIVHIN 590
K+L+ A GSGKT ++L + ++
Sbjct: 129 PPHKHLIAQAHNGSGKTTCFVLGMLSRVD 157
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = +3
Query: 471 TPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 578
TP+QA P+ S K++ A TGSGKTLA+++P +
Sbjct: 40 TPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV 75
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 36.7 bits (81), Expect = 0.015
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = +3
Query: 486 QGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 578
Q P A++GK+L+ A TGSGKT ++++P I
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPII 32
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 35.1 bits (77), Expect = 0.047
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 578
F+E+ + + G + T +Q + GK+ + A+TG+GK++A++LPAI
Sbjct: 377 FDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 434
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 35.1 bits (77), Expect = 0.047
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 578
F+E+ + + G + T +Q + GK+ + A+TG+GK++A++LPAI
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 387
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 34.3 bits (75), Expect = 0.082
Identities = 17/61 (27%), Positives = 34/61 (55%)
Frame = +3
Query: 381 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLA 560
EVH + F+ + + +G+ G+++P+ IQ +G G +++ AQ+G+GKT
Sbjct: 36 EVH---ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 92
Query: 561 Y 563
+
Sbjct: 93 F 93
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/75 (25%), Positives = 38/75 (50%)
Frame = +3
Query: 339 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 518
E + E S +VH + F+ + + +G+ G+++P+ IQ +G G +
Sbjct: 22 EVLEGQDEFFTSYDDVH---ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLD 78
Query: 519 LVGVAQTGSGKTLAY 563
++ AQ+G+GKT +
Sbjct: 79 VIQQAQSGTGKTATF 93
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 32.7 bits (71), Expect = 0.25
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +3
Query: 432 VQQGVKTMGYKEPTPIQAQGW--PIAMSG--KNLVGVAQTGSGKTLAYILPAIVHINNQP 599
+++ ++ MG P+Q W I G +++ + TGSGKTL+Y LP IV +
Sbjct: 32 LKKALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALP-IVQLLASR 90
Query: 600 PIR 608
P+R
Sbjct: 91 PVR 93
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 32.3 bits (70), Expect = 0.33
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = +3
Query: 423 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAY 563
PD ++ G+ G+++P+ IQ +G G +++ AQ+G+GKT +
Sbjct: 50 PDLLR-GIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATF 95
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 31.9 bits (69), Expect = 0.44
Identities = 23/74 (31%), Positives = 31/74 (41%)
Frame = +3
Query: 354 KHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVA 533
K V +S + P Y E D + G K P+Q Q +M K+ +
Sbjct: 170 KPSVQISNKDHETP-SYEELQALDDLEFANLVIFGNKVFRPLQHQACRASMERKDCFVLM 228
Query: 534 QTGSGKTLAYILPA 575
TG GK+L Y LPA
Sbjct: 229 PTGGGKSLCYQLPA 242
>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
putative ATP-dependent helicases
Length = 1058
Score = 31.1 bits (67), Expect = 0.77
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 435 QQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILP 572
+ +K +G QA+ A++GKN+ T SGK+L Y +P
Sbjct: 383 KSALKRIGLNTLYSHQAEAISAALAGKNVAVATMTSSGKSLCYNVP 428
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 447 KTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIV 581
K G P Q + MSG ++ + TG GK+L Y LPA++
Sbjct: 447 KVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALI 491
>At1g13810.1 68414.m01621 expressed protein ; expression supported
by MPSS
Length = 303
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 308 RMWIIKVFVERLE*XXIPIWASHVLPARELF 216
R+W F E ++ W +HVLPARE++
Sbjct: 222 RVWRDTAFWEDMKPALFDFWQNHVLPAREIY 252
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = -1
Query: 252 LGVACFARQRIIFSHQSIQILXXYCHRCQXETNXRXICCLLQIWNXRFHGYY 97
LG F R +H S + + + + E +CC++ WN F+ +Y
Sbjct: 50 LGFVPFYRSNRPVNHTSSKPIALGSNHVEWEEEFERVCCIVGPWNLSFNVFY 101
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 456 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIV 581
GY Q Q + + G + + V TG+GK+L Y +PA++
Sbjct: 266 GYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMI 307
>At5g52530.2 68418.m06518 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +3
Query: 237 NMRRPDWDXXSLQPF--NKNFYDPHPTVLKXSPYEVEEYR--NKHEVTVSGVEVHNPIQY 404
+MRRP+ D +L+PF N+ F +P + + +E+ + R + E T G +V ++
Sbjct: 752 SMRRPNSDNNNLRPFIPNRRFDNPEEST-GGNRFEMTQQRRTRRSETTEDGGDVIRRFKF 810
Query: 405 FEE 413
EE
Sbjct: 811 NEE 813
>At5g52530.1 68418.m06517 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +3
Query: 237 NMRRPDWDXXSLQPF--NKNFYDPHPTVLKXSPYEVEEYR--NKHEVTVSGVEVHNPIQY 404
+MRRP+ D +L+PF N+ F +P + + +E+ + R + E T G +V ++
Sbjct: 752 SMRRPNSDNNNLRPFIPNRRFDNPEEST-GGNRFEMTQQRRTRRSETTEDGGDVIRRFKF 810
Query: 405 FEE 413
EE
Sbjct: 811 NEE 813
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 285 KNFYDPHPTVLKXSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 440
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 161 KQIEDAHIAILTC-PFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 211
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 285 KNFYDPHPTVLKXSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 440
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 237 KQIEDAHIAILTC-PFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 287
>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
identical to DNA Helicase [Arabidopsis thaliana]
GI:11121445
Length = 705
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +3
Query: 504 MSGKNLVGVAQTGSGKTLAYILPAIV 581
M+G++++ + G GK+L Y LPA++
Sbjct: 102 MTGRDVLVIMAAGGGKSLCYQLPAML 127
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,504,507
Number of Sequences: 28952
Number of extensions: 289047
Number of successful extensions: 725
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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