Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0506
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein... 80 3e-16
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 54 2e-08
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 46 4e-06
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 37 0.003
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 31 0.21
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce... 28 1.5
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 27 2.0
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.6
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch... 27 2.6
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc... 25 7.9
>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
Stg1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 79.8 bits (188), Expect = 3e-16
Identities = 58/153 (37%), Positives = 83/153 (54%), Gaps = 5/153 (3%)
Frame = +1
Query: 193 SEELAHESLEWIRMITGEPENTSGDMDNFYEVLKDGTLLCKLANNIHPNMIKKINTSSMA 372
+ +L E+ EWI N D+ + L+ G +LC++ I+ S+M
Sbjct: 2 TSQLEKEAREWIEETLHTKLNAQLDL---LDQLQSGVILCRICKEALGANIR-YKESNMP 57
Query: 373 FKCMENINAFLEAARQL-GVPAQETFQTVDLWERQNLNSVVICLQSLGRKAGTY--GK-P 540
F MENI+AF+ A+Q+ VP+Q+ FQT DL+ER+N V+ + S R A GK
Sbjct: 58 FVQMENISAFINYAQQVVHVPSQDMFQTSDLFERRNDEQVLRSIHSFSRYAAKMFPGKVR 117
Query: 541 SIGPKEAEKNVRNFS-EEQLPAGQGVISLQYGS 636
+GPK AEK R FS ++Q +GV SLQYGS
Sbjct: 118 GLGPKLAEKKPRVFSAQQQREFREGVNSLQYGS 150
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 54.0 bits (124), Expect = 2e-08
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Frame = +1
Query: 211 ESLEWIRMITGEPENTSGDMDNFYEVLKDGTLLCKLANNIHPN-MIKKINTSSMAFKCME 387
E+ +WI G G F + L++G +L L P+ +IK ++ + F+ +
Sbjct: 46 EAKKWIEECLG---TDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSD 102
Query: 388 NINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSL 510
NIN FL+ +G+P F+ D++E +NL V+ C+ +L
Sbjct: 103 NINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHAL 143
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 46.4 bits (105), Expect = 4e-06
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Frame = +1
Query: 208 HESLEWIRMITGEPENTSGDMDNFYEVLKDGTLLCKLANNIHPNMIKKINTS-SMAFKCM 384
HE+ +W+ E N ++D+F + L +G +LC+LA +P + ++ +
Sbjct: 68 HEAKKWLEE---ETNNEYQNLDDFVDALVNGKVLCQLAFKYYPKLASNWKPRYQISERNT 124
Query: 385 ENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSL 510
+NAF +G+ F+T DL R N+ V+ CL +L
Sbjct: 125 VYLNAFFHFLDFIGMFTPFRFETKDLVRRFNIPKVIYCLHAL 166
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 36.7 bits (81), Expect = 0.003
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 13/115 (11%)
Frame = +1
Query: 121 DMANNRATKSGFAAEAQRKINSKYSEELAHESLEWIR-MITGEPENTSGDMDN-----FY 282
++ R T G ++ IN EE E ++ I ++ G+P+ S N F+
Sbjct: 91 EVKKGRITIKGSSSSVSHTIN----EEERREFIKHINSVLAGDPDVGSRVPINTETFEFF 146
Query: 283 EVLKDGTLLCKLANNIHPNMI------KKINTSSMA-FKCMENINAFLEAARQLG 426
+ KDG +L KL N+ P+ I K+ N + FKC+EN N + +A+ +G
Sbjct: 147 DQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMG 201
Score = 30.3 bits (65), Expect = 0.28
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Frame = +1
Query: 274 NFYEVLKDGTLLCKLANNIHPNMI--KKINTS------SMAFKCMENINAFLEAARQLG 426
+F+ L+DG +L + + I PN + KK+N + M FK +EN N ++ + G
Sbjct: 406 DFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKNQG 464
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 30.7 bits (66), Expect = 0.21
Identities = 19/89 (21%), Positives = 35/89 (39%)
Frame = +1
Query: 346 KKINTSSMAFKCMENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSLGRKAG 525
++ +S A E + AF+E A+Q G+P E W+ + + +L +
Sbjct: 118 RRFRSSREAALKEEELQAFIEEAKQQGIPIDENATKKKSWDSNCITPGTPFMDTLAKSLR 177
Query: 526 TYGKPSIGPKEAEKNVRNFSEEQLPAGQG 612
Y + +NVR + G+G
Sbjct: 178 YYIINKLNSDPCWRNVRFILSDASVPGEG 206
>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 12 GTCPVDPPACLHSVHSDFTFYRVCDLFK*FIKLLLVRH 125
G+ V P CLHSV FT V L++ F++L + H
Sbjct: 236 GSATVQTP-CLHSVPDAFTNPDVATLYQKFLRLQSLEH 272
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 402 PRSRKTVGCTGAGNFSNCRPVGETESQLRRDLLAVTG*KGWNLR 533
P+ + V CTGAG+ V +S D L +TG G L+
Sbjct: 119 PKFKNIVDCTGAGDVDTSVEVAAADS---NDYLTITGRSGRTLK 159
>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 203
Score = 27.1 bits (57), Expect = 2.6
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Frame = +1
Query: 289 LKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENI-NAFLEAARQLGVPAQETFQTVDLW 465
LK+ T + L+++IHPN +++ S +N+ N E + L + + VD +
Sbjct: 6 LKENTEIINLSSSIHPNRDSYLDSQSDPLN--QNLYNIETENVKDLNI------EDVDYY 57
Query: 466 ERQNLNSVVICLQSLGRKAGTYGKPSIGPKEAEKNVRN 579
E+ L + I +++ TY K S+G +N N
Sbjct: 58 EK--LQNFKIVDENIDPGLRTYSKRSVGVNNTFQNPCN 93
>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -1
Query: 649 WRXYLNRTEEI*LPDQPGAAPRRSFARSSQLLSVLLTASRRFQPFY 512
W YLN +E +PD P ++ + +L V+ T R ++ Y
Sbjct: 112 WNAYLNTLDETCMPDSPLLWKDKTCLEGTSMLDVINTNLRVYKNQY 157
>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 313
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 103 LNCY*FDMANNRATKSGFAAEAQ 171
LN Y +D NN K+GFA A+
Sbjct: 171 LNDYFYDTVNNGVYKTGFATTAE 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,084,631
Number of Sequences: 5004
Number of extensions: 66681
Number of successful extensions: 201
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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