Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0506
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.) 130 1e-30
SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.) 126 1e-29
SB_18673| Best HMM Match : CH (HMM E-Value=2.5e-05) 101 4e-22
SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 6e-14
SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10) 75 7e-14
SB_18675| Best HMM Match : NUMOD3 (HMM E-Value=8) 61 7e-10
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 3e-07
SB_23839| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_36121| Best HMM Match : CH (HMM E-Value=0.0017) 47 2e-05
SB_28994| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_20280| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_2620| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09) 40 0.003
SB_15403| Best HMM Match : CH (HMM E-Value=0) 35 0.055
SB_50497| Best HMM Match : CH (HMM E-Value=0.0084) 35 0.073
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05) 35 0.073
SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12) 34 0.13
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_15380| Best HMM Match : RA (HMM E-Value=0.11) 29 4.8
SB_7859| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_25086| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_17842| Best HMM Match : RVT_1 (HMM E-Value=2.2e-29) 28 8.4
>SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 130 bits (314), Expect = 1e-30
Identities = 70/147 (47%), Positives = 95/147 (64%), Gaps = 3/147 (2%)
Frame = +1
Query: 181 NSKYSEELAHESLEWIRMITGEPE-NTSGDMDNFYEVLKDGTLLCKLANNIHPNMIKKIN 357
++KY +LA ++ WI I GE D+ +EVLKDG +LC++AN + N+ KIN
Sbjct: 61 DAKYDSDLAAQATAWIEGILGERVFGGKTGADDVHEVLKDGQVLCRVANKLGGNI--KIN 118
Query: 358 TSSMAFKCMENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSLGRKAGTYGK 537
+S MAFK MEN FLE +GVP + FQTVDL+E+QN+ V+ + +LGRKA + GK
Sbjct: 119 SSKMAFKMMENTGKFLEFCDTIGVPKTDMFQTVDLYEKQNMPGVINGIHALGRKAHSTGK 178
Query: 538 P--SIGPKEAEKNVRNFSEEQLPAGQG 612
++GPKEA N R F+EEQ AGQG
Sbjct: 179 TCLALGPKEASANPREFTEEQRRAGQG 205
>SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 126 bits (305), Expect = 1e-29
Identities = 74/179 (41%), Positives = 106/179 (59%), Gaps = 7/179 (3%)
Frame = +1
Query: 178 INSKYSEELAHESLEWIRMITGEPE-NTSGDMDNFYEVLKDGTLLCKLANNIHPNMIKKI 354
I+SKY E+ +WI + GE +G +D ++ LKDG +LC+LAN + ++ KI
Sbjct: 424 IDSKYDPTKEEEARKWIDTVLGESIFGENGGVDTVHQTLKDGQVLCRLANRLGGDL--KI 481
Query: 355 NTSSMAFKCMENINAFLE-AARQLGVPAQETFQTVDLWERQNLNSVVICLQSLGRKAGTY 531
N M FK MENI FL LGV + FQTVDL+E+ N+ +V+ C+ ++GR+A +
Sbjct: 482 NQQKMPFKQMENIGNFLSFIENNLGVAKNDLFQTVDLYEKSNMWNVICCIHAVGRRAYSL 541
Query: 532 GK--PSIGPKEAEKNVRNFSEEQLPAGQGVI-SLQYG--SNXGANQSGINFGXTRHM*N 693
GK P +GPKE+ KN R F+E QL G+ +I S Q G + A SG +FG R + N
Sbjct: 542 GKDVPQLGPKESTKNPRQFTERQLNEGKTIINSFQMGPAAKNVATASGQSFGRQRQIIN 600
>SB_18673| Best HMM Match : CH (HMM E-Value=2.5e-05)
Length = 195
Score = 101 bits (243), Expect = 4e-22
Identities = 61/157 (38%), Positives = 88/157 (56%), Gaps = 1/157 (0%)
Frame = +1
Query: 151 GFAAEAQRKINSKYSEELAHESLEWIRMITGEPENTSGD-MDNFYEVLKDGTLLCKLANN 327
G +A A RKI KY + E+ WI + GE + D+ +VLKDG +L +LA
Sbjct: 9 GMSAAANRKILEKYDPQQEEEARIWIEAVLGEKVFGGAEGPDDVQKVLKDGKILARLAIK 68
Query: 328 IHPNMIKKINTSSMAFKCMENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQS 507
+ + K+N +M FK MENI FL LGV + + FQT DL++ N+ S + ++
Sbjct: 69 LGAKI--KVNEQNMPFKQMENIGNFLSHCGHLGVASGDQFQTADLYDNANMTSCQL-IKD 125
Query: 508 LGRKAGTYGKPSIGPKEAEKNVRNFSEEQLPAGQGVI 618
L P++GPKEAE NVR F+EEQL AG+ ++
Sbjct: 126 L-------DIPTLGPKEAEANVREFTEEQLRAGESIL 155
>SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 74.9 bits (176), Expect = 6e-14
Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 7/112 (6%)
Frame = +1
Query: 175 KINSKYSEELAHESLEWIRMITGEPENTSGDMDN------FYEVLKDGTLLCKLANNIHP 336
++++KY +EL + W+ + G+ + N F E L+ G +LCK+AN I
Sbjct: 265 QVDAKYPKELEGNARRWVETMYGDTVAWGEERPNQRPGETFAEPLRSGVILCKIANKIKS 324
Query: 337 NMIKKINTSSMAFKCMENINAFLE-AARQLGVPAQETFQTVDLWERQNLNSV 489
N I KI S+ +F ENI+ FL+ R LG+ FQTVDL+ERQN+ V
Sbjct: 325 NAIPKIGESNKSFVMQENISKFLDFCERVLGLDRLNLFQTVDLFERQNVGMV 376
Score = 36.7 bits (81), Expect = 0.018
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Frame = +1
Query: 130 NNRATKSGFAAEAQRKINSKYSEELAHESLEWIRMITGE------PENTSGDMDNFYEVL 291
+N+ G AE RKI SKY EL + +W+ + GE S ++F + +
Sbjct: 9 SNKHKSFGLTAEVNRKIQSKYDTELEMQCRDWLEKMLGENIEWGVETEYSRPGESFADGI 68
Query: 292 KDGTLLC 312
DG +LC
Sbjct: 69 FDGIVLC 75
>SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10)
Length = 172
Score = 74.5 bits (175), Expect = 7e-14
Identities = 38/80 (47%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Frame = +1
Query: 253 NTSGDM-DNFYEVLKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEAARQLGV 429
N GD D+F LK G +LCKLAN I P IKKIN + M F MENI F + GV
Sbjct: 81 NFGGDTADDFQNTLKSGVVLCKLANAIQPGAIKKINNAKMNFMMMENIENFCNFVQTKGV 140
Query: 430 PAQETFQTVDLWERQNLNSV 489
+Q F T+DL+E +N++ V
Sbjct: 141 ASQYQFVTIDLFEGKNMHQV 160
>SB_18675| Best HMM Match : NUMOD3 (HMM E-Value=8)
Length = 89
Score = 61.3 bits (142), Expect = 7e-10
Identities = 34/78 (43%), Positives = 46/78 (58%)
Frame = +1
Query: 382 MENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSLGRKAGTYGKPSIGPKEA 561
MENI FL LGV + FQTVDL+E+QN+ + +A P +GPKEA
Sbjct: 18 MENIGNFLLFCESLGVSKVDLFQTVDLYEKQNMAAA---------RAKGLNCPQLGPKEA 68
Query: 562 EKNVRNFSEEQLPAGQGV 615
E N R+F E++L AG+G+
Sbjct: 69 EANPRSFDEDKLRAGKGI 86
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 40.3 bits (90), Expect(2) = 3e-07
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 355 NTSSMAFKCMENINAFLEAARQ--LGVPAQETFQTVDLWERQNLNSVVICLQSLGRK 519
N S + ENI FL A ++ Q+ FQTV L+ERQNL V+ +Q+ RK
Sbjct: 889 NRKSTSLGMQENIANFLNACQEEPFNCNPQDLFQTVYLFERQNLGQVISGIQAFARK 945
Score = 31.9 bits (69), Expect(2) = 3e-07
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +1
Query: 538 PSIGPKEAEKNVRNFSEE 591
P GPKEAEKN RNF E+
Sbjct: 986 PLFGPKEAEKNPRNFPEQ 1003
>SB_23839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 267
Score = 49.2 bits (112), Expect = 3e-06
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Frame = +1
Query: 319 ANNIHPNMIKK--INTSSMAFKCMENINAFLEAARQLGVPAQETFQTVDLWERQNL 480
AN I P +IKK +N M FK MENI F+ + GV + F TVDL+E++N+
Sbjct: 188 ANAIQPGVIKKPHLNPGKMGFKMMENIGWFVNFIKSYGVQEEYIFVTVDLYEKRNV 243
>SB_36121| Best HMM Match : CH (HMM E-Value=0.0017)
Length = 209
Score = 46.8 bits (106), Expect = 2e-05
Identities = 28/86 (32%), Positives = 40/86 (46%)
Frame = +1
Query: 211 ESLEWIRMITGEPENTSGDMDNFYEVLKDGTLLCKLANNIHPNMIKKINTSSMAFKCMEN 390
E+ WI T P D+F E L DG LLC+L N+ + +IN A +N
Sbjct: 32 EARRWIERATFTPFKN----DDFRESLADGVLLCELIVNVANISVGRINKQGTAHAGRDN 87
Query: 391 INAFLEAARQLGVPAQETFQTVDLWE 468
++ F A LG+ + F+ DL E
Sbjct: 88 LSVFFRACEALGLDKYQLFEHEDLDE 113
>SB_28994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 45.6 bits (103), Expect = 4e-05
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +1
Query: 271 DNFYEVLKDGTLLCKLANNIHPNMIKKINTSSMAF------KCMENINAFLEAARQLGVP 432
D+ L DG +LC L N+ + I I+ S KCM+N++ FLEA ++LGV
Sbjct: 330 DDLPASLADGVVLCHLVNSAYKGTIPSIHIPSAGVPKLTMTKCMKNVDYFLEACKKLGVD 389
Query: 433 AQETFQTVDLWERQNLNSVVICLQSL 510
+ + D+ + ++ V +Q+L
Sbjct: 390 RELLCSSADILQEKSPQRVCATVQAL 415
>SB_20280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 45.6 bits (103), Expect = 4e-05
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Frame = +1
Query: 274 NFYEVLKDGTLLCKLANNIHPNMIKKINTSSM--AFKCMENINAFLEAARQL-GVPAQET 444
+F + L+DG LLC++AN +HP + + F C++NI FL A +L + +
Sbjct: 50 DFAQSLRDGVLLCQVANVLHPGAVVDVGMKPQMSQFMCLKNIRNFLTACTRLFNLADGDL 109
Query: 445 FQTVDLWERQNLNSVVICLQSL 510
F +L++ + VV L L
Sbjct: 110 FDANELYDVSDFGKVVNTLSKL 131
>SB_2620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 37
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/27 (62%), Positives = 23/27 (85%)
Frame = +1
Query: 538 PSIGPKEAEKNVRNFSEEQLPAGQGVI 618
P++GPKEAE NVR F+EEQL AG+ ++
Sbjct: 10 PTLGPKEAEANVREFTEEQLRAGESIL 36
>SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)
Length = 959
Score = 39.5 bits (88), Expect = 0.003
Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 23/160 (14%)
Frame = +1
Query: 124 MANNRATKSGFAAEAQRK-INSKYSEELAHESLEWIRMITGEPENTSGDMDNFYEVLKDG 300
MA A + RK + K+ L + WI + GE E + D F +L G
Sbjct: 1 MAEENANHGTRDFDTDRKGMMEKWLIPLKEDLASWISRLLGEEELNT---DTFTSMLDTG 57
Query: 301 TLLCKLANNI----------HPNM------------IKKINTSSMAFKCMENINAFLEAA 414
+LC+LAN I +P K+ + +F +N++ F+
Sbjct: 58 VVLCRLANFIQTVGEEFFVRNPKFPRRGLFPACGVTYKQRGATHGSFVARDNVSNFIRWC 117
Query: 415 RQLGVPAQETFQTVDLWERQNLNSVVICLQSLGRKAGTYG 534
R+L VP F+T DL +N +V++ L + RKA G
Sbjct: 118 RELRVPDVIMFETEDLVLNKNEKTVLLTLLEVARKAFKVG 157
>SB_15403| Best HMM Match : CH (HMM E-Value=0)
Length = 1907
Score = 35.1 bits (77), Expect = 0.055
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 247 PENTSGDMDNFYEVLKDGTLLCKLANNIHPNMI--KKINTSSM-AFKCMENINAFLEAAR 417
P + S D + YE +KDG LLCK+ N P I + IN + F EN + +A
Sbjct: 69 PIDASEDSSDLYEKVKDGILLCKMINLSAPGTIDERVINKPPLKVFTIHENQTLVINSAL 128
Query: 418 QLG 426
+G
Sbjct: 129 AIG 131
>SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)
Length = 2086
Score = 34.7 bits (76), Expect = 0.073
Identities = 35/111 (31%), Positives = 47/111 (42%), Gaps = 24/111 (21%)
Frame = +1
Query: 271 DNFYEVLKDGTLLCKLANNI----------HPNMI--KKI--------NTSSMAFKCMEN 390
D F+ L+DGTLLCKLAN I H + KKI + S F EN
Sbjct: 691 DFFFYALEDGTLLCKLANYIQEMADTYGQKHNTHVPGKKIKFKESKRGHRESKLFHSREN 750
Query: 391 INAFLEAARQLGVPAQETFQTVDLWE----RQNLNSVVICLQSLGRKAGTY 531
+ FL R +P F++ D+ R +VICL + R+ Y
Sbjct: 751 VQKFLTWCRWHDIPEAILFESNDVVLVDECRTGGREIVICLMEIARRVIKY 801
>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
Length = 819
Score = 34.7 bits (76), Expect = 0.073
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +1
Query: 103 LNCY*FDMANNRATKSGFAAEAQRKINSKYSEELAHESLEWIRMITGE 246
L C +MAN R G AE RK+++KY + E+++WI + GE
Sbjct: 652 LVCKDTNMAN-RQKGYGMTAELSRKMSAKYDPVMDAEAVDWIEKVLGE 698
Score = 34.7 bits (76), Expect = 0.073
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 382 MENINAFLEAARQLGVPAQETFQTVDLWERQNLNSV 489
M I FL+ GV + FQTVDL+E+QN+ V
Sbjct: 700 MVTIAKFLDFCGTFGVAKSDLFQTVDLYEKQNIQQV 735
>SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)
Length = 906
Score = 33.9 bits (74), Expect = 0.13
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 19/126 (15%)
Frame = +1
Query: 271 DNFYEVLKDGTLLCKLANNIH-----------------PNMIKKI--NTSSMAFKCMENI 393
DNF + L +G LLCKLA I P++ + N S F +N
Sbjct: 56 DNFMDYLDNGVLLCKLAQLIQKAATEWIKLDKAMSVTLPSLGSRFHQNAKSGTFFARDNA 115
Query: 394 NAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSLGRKAGTYGKPSIGPKEAEKNV 573
FL+ + +G+ F++ L ++ V++CL + R A +G I P K
Sbjct: 116 AYFLKWCKGVGIQDSVMFESDGLVLQKQPREVLLCLLDVARFAANFG---IDPPNLVKLE 172
Query: 574 RNFSEE 591
+ EE
Sbjct: 173 KEIDEE 178
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 454 VDLWERQNLNSVVICLQSLG 513
V +W +N +SVV+C+QSLG
Sbjct: 258 VSVWASENTSSVVVCVQSLG 277
>SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = +3
Query: 225 DSDDHRRTREHLRGYGQLLRSA*RRHSSVQASQQHPPEHDQKDQHIVDG 371
D+ +H REH + + + S RRH+ + H + K+ ++ G
Sbjct: 569 DNKEHHTRREHFKHNLRFIHSKNRRHAGYYLAMNHLGDRSDKELRVLRG 617
>SB_15380| Best HMM Match : RA (HMM E-Value=0.11)
Length = 2124
Score = 28.7 bits (61), Expect = 4.8
Identities = 30/149 (20%), Positives = 65/149 (43%), Gaps = 8/149 (5%)
Frame = +1
Query: 169 QRKINSKYSEELAHESLEWIRMITGEPENTSGDMDNFYEVLKDGT-LLCKLANN----IH 333
Q+K+ +KY + ESL+++ + ++ S DM+ + +L+ T + + NN
Sbjct: 1958 QQKLLAKYCLDAQTESLQFLEKLKKRLDDCSKDMNEPFNILQGSTHWIVGMQNNARFLAR 2017
Query: 334 PNMIKKINTSSMAFKCMENINAFLEAARQL---GVPAQETFQTVDLWERQNLNSVVICLQ 504
+ N + F+ + + L+ +QL A T Q V + + L +V +
Sbjct: 2018 DVTLVDTNAKQLNFQVLSAMRTSLDTIQQLVNSCATASTTQQRVSSYRMRILIGIVTDVV 2077
Query: 505 SLGRKAGTYGKPSIGPKEAEKNVRNFSEE 591
L + T + ++ + E + + SE+
Sbjct: 2078 LLYGELITQAQETVRMHDDEASRKRLSEK 2106
>SB_7859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 257
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +1
Query: 172 RKINSKYSEELAHESLEWIRMITGEPENTSGDMDNFYEVLKDGTLLCKLANNI 330
R + KY H+ EW R+ G P + +G Y+V+ TL+ N++
Sbjct: 31 RYMTKKYMITQVHDYTEWRRLRCGHPLDLNGKSGEDYDVVILWTLMSGEDNDV 83
>SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1524
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -2
Query: 480 EILSLPQVDSLKSFLRRYTQLSCGFEESVDILH-ALEGHRRCVDLFD 343
E + Q+D LK ++Y Q+ FE+ + IL EG R+ DL D
Sbjct: 611 EFVKKKQLDDLKKLQKKYDQMVEDFEKRIKILEDRSEGQRK--DLID 655
>SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3003
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 183 QQIQRRAGPRVLGMDSDDHRRTREHLR 263
Q+ QR GP+V+G +S D R RE+ +
Sbjct: 2291 QRPQRPMGPQVVGKESRDEARKREYYK 2317
>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3172
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 217 LEWIRMITGEPENTSGDMDNFYEVLKDGTLLCKLANNIHPNMI 345
L+W R++ ++ +DNF DG LC L ++ HP ++
Sbjct: 1209 LKWCRLVC---KSYGLKIDNFTVSFSDGRALCYLLHHYHPALL 1248
>SB_25086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 27.9 bits (59), Expect = 8.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 136 GCLPCRTNNNLINYLNKS 83
GC PC TN N+LN++
Sbjct: 76 GCAPCDTNEQACNFLNRT 93
>SB_17842| Best HMM Match : RVT_1 (HMM E-Value=2.2e-29)
Length = 1167
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 527 PTGSRQ*DRKKLRRTCETSPRSSSR 601
P+G + +R LR+T ET P SSSR
Sbjct: 1081 PSGKYRRNRIDLRKTWETQPESSSR 1105
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,724,233
Number of Sequences: 59808
Number of extensions: 523347
Number of successful extensions: 1538
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1524
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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