BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0506 (700 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g27000.1 68418.m03221 kinesin motor protein-related non-conse... 43 2e-04 At3g10310.1 68416.m01237 kinesin motor protein-related similar t... 43 2e-04 At2g47500.1 68415.m05929 kinesin motor protein-related 42 3e-04 At5g48460.1 68418.m05992 fimbrin-like protein, putative strong s... 37 0.011 At1g09170.1 68414.m01024 kinesin motor protein-related similar t... 37 0.011 At5g55400.1 68418.m06902 fimbrin-like protein, putative similar ... 36 0.020 At5g35700.1 68418.m04269 fimbrin-like protein, putative similar ... 35 0.060 At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical t... 34 0.10 At2g04750.1 68415.m00485 fimbrin-like protein, putative similar ... 33 0.18 At5g17440.1 68418.m02046 LUC7 N_terminus domain-containing prote... 33 0.24 At3g44730.1 68416.m04814 kinesin motor protein-related similar t... 31 0.56 At1g63640.2 68414.m07198 kinesin motor protein-related C-termina... 31 0.73 At1g63640.1 68414.m07197 kinesin motor protein-related C-termina... 31 0.73 At5g41310.1 68418.m05020 kinesin motor protein-related 30 1.3 At5g01630.1 68418.m00079 BRCA2 repeat-containing protein low sim... 29 2.2 At3g02140.1 68416.m00182 expressed protein 29 2.2 At3g32270.1 68416.m04114 hypothetical protein similar to putativ... 29 3.9 At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 29 3.9 At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) simi... 29 3.9 At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 28 5.2 At4g15830.1 68417.m02408 expressed protein 28 6.8 At4g04920.1 68417.m00715 expressed protein 28 6.8 At5g03300.1 68418.m00281 adenosine kinase 2 (ADK2) contains Pfam... 27 9.0 At3g18490.1 68416.m02350 aspartyl protease family protein contai... 27 9.0 At2g27760.1 68415.m03364 tRNA isopentenyltransferase 2 / IPP tra... 27 9.0 >At5g27000.1 68418.m03221 kinesin motor protein-related non-consensus AT donor splice site at exon 12; non-consensus AC acceptor splice site at exon 13 Length = 987 Score = 42.7 bits (96), Expect = 2e-04 Identities = 40/173 (23%), Positives = 76/173 (43%), Gaps = 14/173 (8%) Frame = +1 Query: 121 DMANNRATKSGFAAEAQRKINSKYSEELAHESLEWIRMITG--EPENTSGDM--DNFYEV 288 D+ +++S RK+ S +E+ W+R + G ++ G+ + F Sbjct: 21 DVLQQHSSRSSDVGLVSRKVEE--SSLRRYEAAGWLRDMIGVSNGKDFPGEPSEEEFRLG 78 Query: 289 LKDGTLLCKLANNIHPNMIKKI---------NTSSMAFKCMENINAFLEAARQLGVPAQE 441 L+ G +LC + N ++P + K+ + AF+ ENI FL A ++G+P Sbjct: 79 LRSGIVLCNVLNKVNPGSVSKVVEAPDDVADGAALSAFQYFENIRNFLVAIEEMGLP--- 135 Query: 442 TFQTVDLWERQNLNSVVICLQSLGRKAGTYGKPSIGPKEAEKNVR-NFSEEQL 597 +F+ D+ + +V C+ +L + K GP N++ NF +L Sbjct: 136 SFEASDMEKGGKSIRIVNCILALKSYSEWKLKGENGPWRYGSNMKHNFGSRKL 188 >At3g10310.1 68416.m01237 kinesin motor protein-related similar to carboxy-terminal kinesin 2 GB:P79955 [Xenopus laevis] Length = 897 Score = 42.7 bits (96), Expect = 2e-04 Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 19/132 (14%) Frame = +1 Query: 184 SKYSEELA---HESLEWIRMITGEPENTSGDMDN-FYEVLKDGTLLCKLANNIHPNMIKK 351 S+ +EE A ++++W++ + G+ + + F L++G +LC N IHP + K Sbjct: 12 SRRAEEAAARRFQAVQWLKSVVGQLGIPNQPSEKEFISCLRNGMILCNAINKIHPGAVSK 71 Query: 352 I--NTSSM--------AFKCMENINAFLEAARQLGVPAQETFQTVDLWERQNLNS----- 486 + N S + A++ EN+ FL A L +P F+ DL E+ NL S Sbjct: 72 VVENYSYLNGEYQLPPAYQYFENVRNFLVALETLRLPG---FEASDL-EKDNLESGSVTK 127 Query: 487 VVICLQSLGRKA 522 VV C+ LG KA Sbjct: 128 VVDCI--LGLKA 137 >At2g47500.1 68415.m05929 kinesin motor protein-related Length = 974 Score = 42.3 bits (95), Expect = 3e-04 Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 19/128 (14%) Frame = +1 Query: 184 SKYSEELA---HESLEWIRM---ITGEPENTSGDMDNFYEV-LKDGTLLCKLANNIHPNM 342 S+ +EE A +E+ W+R + G + + + + L+ G +LCK+ N + P Sbjct: 37 SRRAEEAASRRYEAANWLRRMVGVVGAKDLPAEPTEEGLRLGLRSGIILCKVLNKVQPGA 96 Query: 343 IKKINTSSM------------AFKCMENINAFLEAARQLGVPAQETFQTVDLWERQNLNS 486 + K+ S AF+ EN+ FL A +++G P TF+ DL + N + Sbjct: 97 VSKVVESPCDAILVADGAPLSAFQYFENVRNFLVAIQEMGFP---TFEASDLEQGGNASR 153 Query: 487 VVICLQSL 510 VV C+ ++ Sbjct: 154 VVNCVLAI 161 >At5g48460.1 68418.m05992 fimbrin-like protein, putative strong similarity to fimbrin-like protein AtFim2 [Arabidopsis thaliana] GI:2737926; contains Pfam profile PF00307: Calponin homology (CH) domain Length = 654 Score = 37.1 bits (82), Expect = 0.011 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Frame = +1 Query: 271 DNFYEVLKDGTLLCKLANNIHPNMI--KKINTSSM--AFKCMENINAFLEAARQLG 426 ++ +EV KDG LLCKL N P I + INT SM ++ EN L +A+ +G Sbjct: 155 NDLFEVAKDGVLLCKLINVAVPGTIDERAINTKSMLNPWERNENHTLCLNSAKAIG 210 >At1g09170.1 68414.m01024 kinesin motor protein-related similar to GB:AAB61066 Length = 1010 Score = 37.1 bits (82), Expect = 0.011 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 16/117 (13%) Frame = +1 Query: 208 HESLEWIR----MITGEPENTSGDMDNFYEVLKDGTLLCKLANNIHPNMIKKI------- 354 +E+ W+R ++ G ++F L+ G LLC + N + P + K+ Sbjct: 58 YEAARWVRNTLGVVGGRDLPADPSEEDFRIALRSGILLCNVLNRVKPGAVPKVVEAPNDP 117 Query: 355 -----NTSSMAFKCMENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSL 510 + AF+ EN+ FL ++G+P TF+ D + +V C+ +L Sbjct: 118 LVNQDGAALSAFQYFENLRNFLVFVEEMGIP---TFEVSDFEKGGKSARIVECVLAL 171 >At5g55400.1 68418.m06902 fimbrin-like protein, putative similar to fimbrin-like protein (ATFIM1) [Arabidopsis thaliana] GI:2905893; contains Pfam profile PF00307: Calponin homology (CH) domain Length = 714 Score = 36.3 bits (80), Expect = 0.020 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Frame = +1 Query: 265 DMDNFYEVLKDGTLLCKLANNIHPNMI--KKINTSSM--AFKCMENINAFLEAARQLG 426 D ++ YE++KDG LLCKL N P I + INT + ++ EN L +A+ +G Sbjct: 153 DSNDLYELVKDGVLLCKLINIAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAVG 210 >At5g35700.1 68418.m04269 fimbrin-like protein, putative similar to fimbrin-like protein (ATFIM1) [Arabidopsis thaliana] GI:2905893, fimbrin [Schizosaccharomyces pombe] GI:3057144; contains Pfam profile PF00307: Calponin homology (CH) domain Length = 687 Score = 34.7 bits (76), Expect = 0.060 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 4/54 (7%) Frame = +1 Query: 277 FYEVLKDGTLLCKLANNIHPNMI--KKINTSSM--AFKCMENINAFLEAARQLG 426 F++++KDG LLCKL N P I + INT ++ EN+ L +A+ +G Sbjct: 155 FFDLVKDGVLLCKLINVAVPGTIDERAINTKKTLNPWERNENLTLGLNSAKAIG 208 >At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical to fimbrin-like protein (ATFIM1) [Arabidopsis thaliana] GI:2905893 Length = 687 Score = 33.9 bits (74), Expect = 0.10 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Frame = +1 Query: 271 DNFYEVLKDGTLLCKLANNIHPNMI--KKINTSSM--AFKCMENINAFLEAARQLG 426 + YE++KDG LLCKL N P I + INT + ++ EN L +A+ +G Sbjct: 154 NQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAVG 209 >At2g04750.1 68415.m00485 fimbrin-like protein, putative similar to fimbrin-like protein (ATFIM1) [Arabidopsis thaliana] GI:2905893; contains Pfam profile PF00307: Calponin homology (CH) domain Length = 652 Score = 33.1 bits (72), Expect = 0.18 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 4/53 (7%) Frame = +1 Query: 280 YEVLKDGTLLCKLANNIHPNMI--KKINTSS--MAFKCMENINAFLEAARQLG 426 ++++KDG LLCKL N P I + INT ++ EN++ L +A+ +G Sbjct: 150 FDLVKDGVLLCKLINIAVPGTIDERAINTKKELNPWERTENLSLCLNSAKAIG 202 >At5g17440.1 68418.m02046 LUC7 N_terminus domain-containing protein contains Pfam domain PF03194: Protein of unknown function, DUF259 Length = 404 Score = 32.7 bits (71), Expect = 0.24 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = +3 Query: 225 DSDDHRRTREHLRGYGQLLRSA*R-RHSSVQASQQHPPEHDQKDQH 359 D D H REH R Y Q R R SS S++ P +HD++ +H Sbjct: 356 DRDRHHDHREHDRNYNQSRGYDSRSRRSSRSRSRERPRDHDRRRRH 401 >At3g44730.1 68416.m04814 kinesin motor protein-related similar to 4 other kinesin-like proteins of A. thaliana: F02P16.12 (PID:g2191180), katA (D11371), katB (D21137), and katC (D21138); contains non-consensus AT-AC splice sites at intron 10 Length = 1087 Score = 31.5 bits (68), Expect = 0.56 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 13/93 (13%) Frame = +1 Query: 271 DNFYEVLKDGTLLCKLANNIHPNMIKKI-------------NTSSMAFKCMENINAFLEA 411 D F L++G +LC + N ++P + K+ + A + EN+ FL+A Sbjct: 16 DEFSLALRNGLILCNVLNKVNPGSVLKVVENPITPAIQYADGAAQSAIQYFENMRNFLKA 75 Query: 412 ARQLGVPAQETFQTVDLWERQNLNSVVICLQSL 510 + + TF DL + + N VV C+ L Sbjct: 76 VEDMQL---LTFGASDLEKGGSSNKVVDCILCL 105 >At1g63640.2 68414.m07198 kinesin motor protein-related C-terminal region is similar to C-term region of kinesin motor protein GB:AAB51397 (Mus musculus); contains Pfam profile: PF00225 Kinesin motor domain Length = 1065 Score = 31.1 bits (67), Expect = 0.73 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 2/97 (2%) Frame = +1 Query: 271 DNFYEVLKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEAARQLGVPAQETFQ 450 D L+DGT+LC L N + P ++ + A I FL A ++ +P F+ Sbjct: 65 DELRACLRDGTVLCSLLNQLSPGSMRMGGSFEPA---SVKIERFLTAMDEMALP---RFE 118 Query: 451 TVDLWERQNLNSVVICLQSL--GRKAGTYGKPSIGPK 555 D+ E+ ++ V+ L++L G+Y K S+ + Sbjct: 119 VSDI-EQGDMVPVLQSLKALKASFSDGSYDKNSLAAR 154 >At1g63640.1 68414.m07197 kinesin motor protein-related C-terminal region is similar to C-term region of kinesin motor protein GB:AAB51397 (Mus musculus); contains Pfam profile: PF00225 Kinesin motor domain Length = 1064 Score = 31.1 bits (67), Expect = 0.73 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 2/97 (2%) Frame = +1 Query: 271 DNFYEVLKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEAARQLGVPAQETFQ 450 D L+DGT+LC L N + P ++ + A I FL A ++ +P F+ Sbjct: 65 DELRACLRDGTVLCSLLNQLSPGSMRMGGSFEPA---SVKIERFLTAMDEMALP---RFE 118 Query: 451 TVDLWERQNLNSVVICLQSL--GRKAGTYGKPSIGPK 555 D+ E+ ++ V+ L++L G+Y K S+ + Sbjct: 119 VSDI-EQGDMVPVLQSLKALKASFSDGSYDKNSLAAR 154 >At5g41310.1 68418.m05020 kinesin motor protein-related Length = 961 Score = 30.3 bits (65), Expect = 1.3 Identities = 18/56 (32%), Positives = 29/56 (51%) Frame = +1 Query: 289 LKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEAARQLGVPAQETFQTV 456 L DGT+LC L N + P ++ S C+ NI FL A ++ +P E+ + + Sbjct: 72 LVDGTVLCNLLNQLSPGSMRM--GGSFEPGCV-NIERFLAAMDEMTLPRFESLKAL 124 >At5g01630.1 68418.m00079 BRCA2 repeat-containing protein low similarity to breast cancer susceptibility protein [Gallus gallus] GI:19568157; contains Pfam profile PF00634: BRCA2 repeat Length = 1155 Score = 29.5 bits (63), Expect = 2.2 Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Frame = +1 Query: 130 NNRATKSGFAAEAQRKINSKYSEELA---HESLEWIRMITGEPENTSGDMDNFYEVLKDG 300 NN + +G+ A ++ N S H S + R + E + G++ ++ D Sbjct: 319 NNGSVNTGYIAHEEKTSNKHTSNSFVSPLHSSSKQFRSVNLENLASGGNLIKKFDTAVDE 378 Query: 301 TLLCKLANNIHPNMIKKINTSSMAFKCMENI---NAFLEAARQLGVPAQETFQTVDLWER 471 T C L N P N +A N N F+ ARQLG PA + VD+ R Sbjct: 379 TN-CAL-NISKPATHGLSNNRPLASDMAVNNSKGNGFIPRARQLGRPADQPL--VDITNR 434 Query: 472 QN 477 ++ Sbjct: 435 RD 436 >At3g02140.1 68416.m00182 expressed protein Length = 319 Score = 29.5 bits (63), Expect = 2.2 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +3 Query: 336 EHDQKDQHIVDGLQVHGEYQRFPRSRK 416 E D+KD + GL ++G++ PRSRK Sbjct: 57 EEDEKDVELTLGLSLNGQFGTDPRSRK 83 >At3g32270.1 68416.m04114 hypothetical protein similar to putative replication protein A1 GB:AAC95163 GI:4006821 from [Arabidopsis thaliana] Length = 209 Score = 28.7 bits (61), Expect = 3.9 Identities = 15/59 (25%), Positives = 31/59 (52%) Frame = -3 Query: 500 KQITTELRFCLSHRSTV*KVSCAGTPNCLAASRKALIFSMHLKAIDDVLIFLIMFGWML 324 + + +LR C ++ K++C CLA+ ++AL FS + ++ +I ++ W L Sbjct: 144 QNVVNDLRICFKLKN---KINCV--LECLASGKQALDFSQNYHSLGGGVIVAVLGWWKL 197 >At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing protein Length = 561 Score = 28.7 bits (61), Expect = 3.9 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 3/82 (3%) Frame = +3 Query: 120 RHGKQPSHQIRICS*SPEKDQQQIQRRAGPRVLGMDSDDHRRTREHLRGYGQLLRSA*RR 299 RH H+ R EKD + +R R D D + R+H + + RS R Sbjct: 79 RHRSSREHRDR----DREKDVDKEERNGKDRERDRDKDRDSKGRDHEKDRSRRSRSRSER 134 Query: 300 HSSVQASQQ---HPPEHDQKDQ 356 H S + + P E + KD+ Sbjct: 135 HRSQEREKSLEIEPKERETKDR 156 >At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) similar to CREB-binding protein GB:AAC51770 GI:2443859 from [Homo sapiens]; contains Pfam PF02135: TAZ zinc finger profile; contains Pfam PF00569: Zinc finger, ZZ type domain; identical to histone acetyltransferase HAC4 (GI:14794966) {Arabidopsis thaliana} Length = 1456 Score = 28.7 bits (61), Expect = 3.9 Identities = 20/74 (27%), Positives = 34/74 (45%) Frame = +1 Query: 376 KCMENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSLGRKAGTYGKPSIGPK 555 K +E FLE R+ P++ +++ ++ Q + +V +CL G +G S GP Sbjct: 913 KVLEVKERFLELFREENYPSEFPYKSKAIFLFQKIENVEVCL--FGMFVQEFGTDS-GPP 969 Query: 556 EAEKNVRNFSEEQL 597 + R S E L Sbjct: 970 NERRTFRTVSGEAL 983 >At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein contains Pfam domain, PF00098: Zinc knuckle Length = 268 Score = 28.3 bits (60), Expect = 5.2 Identities = 12/41 (29%), Positives = 15/41 (36%) Frame = -1 Query: 133 CLPCRTNNNLINYLNKSQTR*KVKSLCTECKQAGGSTGHVP 11 CL CR + + + K LC C G S H P Sbjct: 101 CLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHCP 141 >At4g15830.1 68417.m02408 expressed protein Length = 296 Score = 27.9 bits (59), Expect = 6.8 Identities = 18/59 (30%), Positives = 30/59 (50%) Frame = -3 Query: 515 LPSDCKQITTELRFCLSHRSTV*KVSCAGTPNCLAASRKALIFSMHLKAIDDVLIFLIM 339 LP K I ++ + RS + K S + A + L+ HLK++DD+L+ L+M Sbjct: 97 LPILEKLIVVMVKAMKNPRSALCKTSIMTCSDIFTAYGEKLLEGPHLKSMDDLLLQLLM 155 >At4g04920.1 68417.m00715 expressed protein Length = 1250 Score = 27.9 bits (59), Expect = 6.8 Identities = 11/35 (31%), Positives = 16/35 (45%) Frame = +2 Query: 125 WQTTEPPNQDLQLKPRERSTANTAKSWPTSPWNGF 229 W+ T P LQ P+ + + S +S W GF Sbjct: 347 WEVTPGPGNGLQATPKISTGSRVPPSLSSSSWTGF 381 >At5g03300.1 68418.m00281 adenosine kinase 2 (ADK2) contains Pfam profile: PF00294 pfkB family carbohydrate kinase; identical to cDNA adenosine kinase 2 (ADK2) GI:12017763 Length = 345 Score = 27.5 bits (58), Expect = 9.0 Identities = 10/35 (28%), Positives = 19/35 (54%) Frame = +1 Query: 442 TFQTVDLWERQNLNSVVICLQSLGRKAGTYGKPSI 546 TF V WE +++ + I + L + GTY + ++ Sbjct: 229 TFSRVHGWETEDVEQIAIKISQLPKATGTYKRTTV 263 >At3g18490.1 68416.m02350 aspartyl protease family protein contains Pfam domain, PF00026: eukaryotic aspartyl protease Length = 500 Score = 27.5 bits (58), Expect = 9.0 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%) Frame = -3 Query: 323 LASLHRRVPSLSTS*KLSISPEVF--SGSPVIIRIHSKDSWASS 198 + SL SL+T+ S+S VF S SP+ + +HS+D++ +S Sbjct: 50 ILSLDPTRSSLTTTKPESLSDPVFFNSSSPLSLELHSRDTFVAS 93 >At2g27760.1 68415.m03364 tRNA isopentenyltransferase 2 / IPP transferase 2 (IPT2) identical to tRNA isopentenyltransferase (IPT2) [Arabidopsis thaliana] GI:14279058; identical to cDNA tRNA isopentenyl transferase GI:12383201; Length = 466 Score = 27.5 bits (58), Expect = 9.0 Identities = 15/31 (48%), Positives = 20/31 (64%) Frame = +1 Query: 265 DMDNFYEVLKDGTLLCKLANNIHPNMIKKIN 357 D+ + YE+LK+ L AN IHPN +KIN Sbjct: 163 DLSHGYELLKE--LDPVAANRIHPNNHRKIN 191 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,543,864 Number of Sequences: 28952 Number of extensions: 366826 Number of successful extensions: 1044 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 1015 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1044 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1496852856 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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