Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0504
         (750 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4D9W5 Cluster: Putative uncharacterized protein; n=2; ...    34   3.3  
UniRef50_Q88SK2 Cluster: Extracellular protein; n=1; Lactobacill...    33   5.7  
UniRef50_Q4UZA6 Cluster: Helicase; n=5; Proteobacteria|Rep: Heli...    33   5.7  
UniRef50_A7H8X7 Cluster: Nitrite reductase (Cytochrome; ammonia-...    33   5.7  
UniRef50_A0VA63 Cluster: General secretion pathway protein H pre...    33   5.7  
UniRef50_P34342 Cluster: Ran GTPase-activating protein 2; n=3; C...    33   5.7  
UniRef50_A4X1Q1 Cluster: Transcriptional regulator, XRE family; ...    33   7.5  
UniRef50_Q84X68 Cluster: Flagella membrane glycoprotein 1B; n=1;...    33   7.5  
UniRef50_UPI000039723D Cluster: COG5295: Autotransporter adhesin...    33   9.9  
UniRef50_Q62HV1 Cluster: Transglycosylase SLT domain protein; n=...    33   9.9  
UniRef50_Q6BH82 Cluster: Similar to CA1309|IPF8627 Candida albic...    33   9.9  

>UniRef50_Q4D9W5 Cluster: Putative uncharacterized protein; n=2;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 1202

 Score = 34.3 bits (75), Expect = 3.3
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
 Frame = +1

Query: 250 SGATLQYVRANSDQAQLTPAKAAGTTQAKPLVAKVVVQAGHSNTDTSNQPAVLTKLLPSS 429
           SG    YVR N     LT  K       K L+  +  QAG S T + +  +V++ + P  
Sbjct: 679 SGLVATYVRVNRWPKPLTDGK-------KSLLKFIAQQAG-SPTLSQSTASVISPISPK- 729

Query: 430 NAGARYVMQQKT----VPISIGNKVLLSSPTKQGVKKQQIIA 543
             G+ ++ Q ++    V  +IGN   LSSPT  G ++ + +A
Sbjct: 730 RGGSAFIAQGESNSQGVVAAIGNSKSLSSPTAMGEERLEALA 771


>UniRef50_Q88SK2 Cluster: Extracellular protein; n=1; Lactobacillus
           plantarum|Rep: Extracellular protein - Lactobacillus
           plantarum
          Length = 1136

 Score = 33.5 bits (73), Expect = 5.7
 Identities = 34/143 (23%), Positives = 53/143 (37%)
 Frame = +1

Query: 88  PKPVTFVMNKNTKKVSVAGVQANSKGNAVLAQIGKQLVMVPAEGAQKIKLVSAGSGATLQ 267
           P  +T V  +    V+VA  Q     N  + Q   Q        A         S     
Sbjct: 129 PIRLTAVKAEKLALVAVADDQKGPALNVEIKQPQTQADQASTSSASSSAATDTNSSTASS 188

Query: 268 YVRANSDQAQLTPAKAAGTTQAKPLVAKVVVQAGHSNTDTSNQPAVLTKLLPSSNAGARY 447
             +A S  A L  +++A TT    L ++ V Q   S+++ S + A       + +AG   
Sbjct: 189 SRQATSSAASLDSSRSAATT----LSSQAVNQTSASSSEPSQETAANQSSAVTESAGETT 244

Query: 448 VMQQKTVPISIGNKVLLSSPTKQ 516
                    S  ++V  S+PTKQ
Sbjct: 245 DSSASISSSSTASQVFSSAPTKQ 267


>UniRef50_Q4UZA6 Cluster: Helicase; n=5; Proteobacteria|Rep:
           Helicase - Xanthomonas campestris pv. campestris (strain
           8004)
          Length = 967

 Score = 33.5 bits (73), Expect = 5.7
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +1

Query: 145 VQANSKGNAVLAQIGKQLVMVPAEGAQKIKLVSAGSGATLQYVR 276
           +Q+N KG+A+L  +G+ L M    G Q+  ++   S  T +Y+R
Sbjct: 419 IQSNRKGDALLLVLGRALAMAEKLGGQRKAVIFTESRRTQEYLR 462


>UniRef50_A7H8X7 Cluster: Nitrite reductase (Cytochrome;
           ammonia-forming) precursor; n=6; Bacteria|Rep: Nitrite
           reductase (Cytochrome; ammonia-forming) precursor -
           Anaeromyxobacter sp. Fw109-5
          Length = 515

 Score = 33.5 bits (73), Expect = 5.7
 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +1

Query: 247 GSGATLQYVRANSDQAQ--LTPAKAAGTTQAKPLVAKVVVQAGHSNTDTSNQPAVLTKLL 420
           G+GATL + +  SD A+    P        AKP  AK    AG   TD ++ PAV  K  
Sbjct: 20  GAGATLAHAQTRSDAAKPGAAPKGKKSGASAKPPGAK-AAPAGQKITDDTDDPAVWGKEY 78

Query: 421 P 423
           P
Sbjct: 79  P 79


>UniRef50_A0VA63 Cluster: General secretion pathway protein H
           precursor; n=1; Delftia acidovorans SPH-1|Rep: General
           secretion pathway protein H precursor - Delftia
           acidovorans SPH-1
          Length = 148

 Score = 33.5 bits (73), Expect = 5.7
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +1

Query: 73  QYAIAPKPVTFVMNKNTKKVSVAGVQANSKGNAVLAQIGKQLVMVPAEGAQKIKLVSAG- 249
           Q  +   PV F +N N+++  +AG       +++  Q+     M  A+G+Q I  +  G 
Sbjct: 56  QATLQGMPVAFAINTNSRQYGIAGQATAKLPDSLTVQLTTAAGMALADGSQTIVFLPEGG 115

Query: 250 -SGATLQYVRANS 285
            +G ++   RA S
Sbjct: 116 ATGGSISIARAQS 128


>UniRef50_P34342 Cluster: Ran GTPase-activating protein 2; n=3;
           Caenorhabditis|Rep: Ran GTPase-activating protein 2 -
           Caenorhabditis elegans
          Length = 960

 Score = 33.5 bits (73), Expect = 5.7
 Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +1

Query: 79  AIAPKPVTFVMNKNTKKVSVAGVQANSKGNAVLAQIGKQLVMVPAEGAQK-IKLVSAGSG 255
           A A + +  +MNK    + +   Q NS GN +++ + K L +  AE A+  +K+++A S 
Sbjct: 418 ASADEMMNDLMNKGFGCMKIEDNQQNSNGNGMVSFLDKSLKLDTAESAEPVVKVIAAASS 477

Query: 256 ATLQYVRANS 285
                +R N+
Sbjct: 478 MKALELRGNT 487


>UniRef50_A4X1Q1 Cluster: Transcriptional regulator, XRE family;
           n=2; Salinispora|Rep: Transcriptional regulator, XRE
           family - Salinispora tropica CNB-440
          Length = 191

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
 Frame = +1

Query: 139 AGVQANSKGNAVLAQIG--KQLVMVPAEGAQKIKLVSAGSGATLQYVRANSDQAQLTPAK 312
           AG+  + +G  VLA I     L M   +   +I        A L    A +D A  T   
Sbjct: 72  AGLLDDREGQGVLAAIAADSDLTMAQKQSLTQIYETFRRENARLAEATAAADAASATTEA 131

Query: 313 AAGTTQAKPLVAKVVVQAGHSNTDTSNQP 399
           A GTT A+P    V  ++      T  +P
Sbjct: 132 ATGTTTAEPTTGTVTTESVTGLPTTEPEP 160


>UniRef50_Q84X68 Cluster: Flagella membrane glycoprotein 1B; n=1;
            Chlamydomonas reinhardtii|Rep: Flagella membrane
            glycoprotein 1B - Chlamydomonas reinhardtii
          Length = 2213

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
 Frame = +1

Query: 199  VMVPAEGAQKIKLVSAGSGATLQYVRANSDQAQL-TPAKAAGTTQAKPLVAKVVVQAGHS 375
            +++P     ++KL+SAG+ +    V    +QA+L + A A G +    L A+VV  A  +
Sbjct: 1587 MLMPDRLGLQVKLLSAGNFSAGDTVNIKPEQAELRSSALATGPSYVPKLAAQVVNPALFA 1646

Query: 376  NTDTSNQPAVLTKL 417
            N + ++  A+  +L
Sbjct: 1647 NANLTSATAITVRL 1660


>UniRef50_UPI000039723D Cluster: COG5295: Autotransporter adhesin;
            n=1; Haemophilus somnus 2336|Rep: COG5295:
            Autotransporter adhesin - Haemophilus somnus 2336
          Length = 2419

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +1

Query: 205  VPAEGAQKIKLVSAGSGATLQYVRANSDQAQLT-PAKAAGTTQAKPLVAKVVVQAGHSNT 381
            + + G ++I+L S  SGATL + ++NSD+ +++  A   G T A  +   +      S+ 
Sbjct: 1326 ITSNGKKQIEL-SPESGATLTFTKSNSDKVKISGVASGLGDTTANNVATNIENVLTGSSI 1384

Query: 382  DTSNQPAVLTK 414
            DT    A+  K
Sbjct: 1385 DTIQSNAINVK 1395


>UniRef50_Q62HV1 Cluster: Transglycosylase SLT domain protein; n=21;
           Burkholderia|Rep: Transglycosylase SLT domain protein -
           Burkholderia mallei (Pseudomonas mallei)
          Length = 370

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = +1

Query: 208 PAEGAQKIKLVSAGSGATLQYVRANSDQAQLTPAKAAGTTQA 333
           PA+GA  +  VS  SGAT + VR   D A     KAA   +A
Sbjct: 304 PAQGAVTVATVSTSSGATQKRVRTTLDGAHPLTIKAAAAPKA 345


>UniRef50_Q6BH82 Cluster: Similar to CA1309|IPF8627 Candida albicans
           IPF8627; n=1; Debaryomyces hansenii|Rep: Similar to
           CA1309|IPF8627 Candida albicans IPF8627 - Debaryomyces
           hansenii (Yeast) (Torulaspora hansenii)
          Length = 706

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 2/106 (1%)
 Frame = +1

Query: 277 ANSDQAQLTPAKAAGTTQAKPLVAKVVVQA-GHSNTDTSNQPAVLTKLLPSSNAGARYVM 453
           AN +   + P +    T     +A+  V +    +T     P VL    P   +    + 
Sbjct: 580 ANKNSISIAPHEVLPVTLLSRSIAEQEVYSDSKDSTPPLKTPKVLQMNSPIKRSSTTAIP 639

Query: 454 QQKTVPISIGNKVLLSSPTKQGVKKQQIIAVKSSSTKXFNEK-SFH 588
               VP+++  + L SSP  + +  + +IAV +++ K  N K S H
Sbjct: 640 TTNGVPVALKIRSLNSSPLSRLLTNEDLIAVDATNLKSSNTKVSIH 685


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 673,436,753
Number of Sequences: 1657284
Number of extensions: 12236498
Number of successful extensions: 32478
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 31412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32460
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)