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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0504
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    24   1.1  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   2.0  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   2.0  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    23   2.0  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    23   2.0  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   2.0  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   2.0  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    23   3.4  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   3.4  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    23   3.4  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           23   3.4  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    23   3.4  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    23   3.4  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   8.0  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   8.0  
AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax pr...    21   8.0  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   8.0  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 25/102 (24%), Positives = 43/102 (42%)
 Frame = +1

Query: 304 PAKAAGTTQAKPLVAKVVVQAGHSNTDTSNQPAVLTKLLPSSNAGARYVMQQKTVPISIG 483
           P K A +T ++ L +     +  S+T+ +      +K   SSN    Y   ++   + +G
Sbjct: 154 PGKPATSTTSQNLSSPASSTSSTSSTEKAGTNNNNSKSSQSSNPPQIYPWMKR---VHLG 210

Query: 484 NKVLLSSPTKQGVKKQQIIAVKSSSTKXFNEKSFHIGKFLTR 609
                S+    G  K+Q  +     T    EK FH  ++LTR
Sbjct: 211 Q----STVNANGETKRQRTSYTRYQTLEL-EKEFHFNRYLTR 247


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 25/102 (24%), Positives = 43/102 (42%)
 Frame = +1

Query: 304 PAKAAGTTQAKPLVAKVVVQAGHSNTDTSNQPAVLTKLLPSSNAGARYVMQQKTVPISIG 483
           P K A +T ++ L +     +  S+T+ +      +K   SSN    Y   ++   + +G
Sbjct: 154 PGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKR---VHLG 210

Query: 484 NKVLLSSPTKQGVKKQQIIAVKSSSTKXFNEKSFHIGKFLTR 609
                S+    G  K+Q  +     T    EK FH  ++LTR
Sbjct: 211 Q----STVNANGETKRQRTSYTRYQTLEL-EKEFHFNRYLTR 247


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 25/102 (24%), Positives = 43/102 (42%)
 Frame = +1

Query: 304 PAKAAGTTQAKPLVAKVVVQAGHSNTDTSNQPAVLTKLLPSSNAGARYVMQQKTVPISIG 483
           P K A +T ++ L +     +  S+T+ +      +K   SSN    Y   ++   + +G
Sbjct: 154 PGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKR---VHLG 210

Query: 484 NKVLLSSPTKQGVKKQQIIAVKSSSTKXFNEKSFHIGKFLTR 609
                S+    G  K+Q  +     T    EK FH  ++LTR
Sbjct: 211 Q----STVNANGETKRQRTSYTRYQTLEL-EKEFHFNRYLTR 247


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 25/102 (24%), Positives = 43/102 (42%)
 Frame = +1

Query: 304 PAKAAGTTQAKPLVAKVVVQAGHSNTDTSNQPAVLTKLLPSSNAGARYVMQQKTVPISIG 483
           P K A +T ++ L +     +  S+T+ +      +K   SSN    Y   ++   + +G
Sbjct: 154 PGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKR---VHLG 210

Query: 484 NKVLLSSPTKQGVKKQQIIAVKSSSTKXFNEKSFHIGKFLTR 609
                S+    G  K+Q  +     T    EK FH  ++LTR
Sbjct: 211 Q----STVNANGETKRQRTSYTRYQTLEL-EKEFHFNRYLTR 247


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 25/102 (24%), Positives = 43/102 (42%)
 Frame = +1

Query: 304 PAKAAGTTQAKPLVAKVVVQAGHSNTDTSNQPAVLTKLLPSSNAGARYVMQQKTVPISIG 483
           P K A +T ++ L +     +  S+T+ +      +K   SSN    Y   ++   + +G
Sbjct: 110 PGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKR---VHLG 166

Query: 484 NKVLLSSPTKQGVKKQQIIAVKSSSTKXFNEKSFHIGKFLTR 609
                S+    G  K+Q  +     T    EK FH  ++LTR
Sbjct: 167 Q----STVNANGETKRQRTSYTRYQTLEL-EKEFHFNRYLTR 203


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 25/102 (24%), Positives = 43/102 (42%)
 Frame = +1

Query: 304 PAKAAGTTQAKPLVAKVVVQAGHSNTDTSNQPAVLTKLLPSSNAGARYVMQQKTVPISIG 483
           P K A +T ++ L +     +  S+T+ +      +K   SSN    Y   ++   + +G
Sbjct: 154 PGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKR---VHLG 210

Query: 484 NKVLLSSPTKQGVKKQQIIAVKSSSTKXFNEKSFHIGKFLTR 609
                S+    G  K+Q  +     T    EK FH  ++LTR
Sbjct: 211 Q----STVNANGETKRQRTSYTRYQTLEL-EKEFHFNRYLTR 247


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 25/102 (24%), Positives = 43/102 (42%)
 Frame = +1

Query: 304 PAKAAGTTQAKPLVAKVVVQAGHSNTDTSNQPAVLTKLLPSSNAGARYVMQQKTVPISIG 483
           P K A +T ++ L +     +  S+T+ +      +K   SSN    Y   ++   + +G
Sbjct: 154 PGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKR---VHLG 210

Query: 484 NKVLLSSPTKQGVKKQQIIAVKSSSTKXFNEKSFHIGKFLTR 609
                S+    G  K+Q  +     T    EK FH  ++LTR
Sbjct: 211 Q----STVNANGETKRQRTSYTRYQTLEL-EKEFHFNRYLTR 247


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 574 EKSFHIGKFLTR 609
           EK FH  K+LTR
Sbjct: 199 EKEFHFNKYLTR 210


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 574 EKSFHIGKFLTR 609
           EK FH  K+LTR
Sbjct: 269 EKEFHFNKYLTR 280


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 574 EKSFHIGKFLTR 609
           EK FH  K+LTR
Sbjct: 199 EKEFHFNKYLTR 210


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 574 EKSFHIGKFLTR 609
           EK FH  K+LTR
Sbjct: 199 EKEFHFNKYLTR 210


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 574 EKSFHIGKFLTR 609
           EK FH  K+LTR
Sbjct: 58  EKEFHFNKYLTR 69


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 574 EKSFHIGKFLTR 609
           EK FH  K+LTR
Sbjct: 58  EKEFHFNKYLTR 69


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 574 EKSFHIGKFLTR 609
           EK FH  ++LTR
Sbjct: 258 EKEFHFNRYLTR 269


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 126 KSLSSRCTSKLKRQCCTSSNW 188
           K LS +    L R C T+S+W
Sbjct: 17  KLLSCKDFDTLYRDCTTASSW 37


>AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax
           protein.
          Length = 100

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 574 EKSFHIGKFLTR 609
           EK FH  ++LTR
Sbjct: 24  EKEFHFNRYLTR 35


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 574 EKSFHIGKFLTR 609
           EK FH  ++LTR
Sbjct: 260 EKEFHFNRYLTR 271


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,294
Number of Sequences: 336
Number of extensions: 3141
Number of successful extensions: 26
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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