BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0504 (750 letters) Database: tribolium 336 sequences; 122,585 total letters Searching.......................................................done Score E Sequences producing significant alignments: (bits) Value AY055847-1|AAL23667.2| 312|Tribolium castaneum cephalothorax pr... 24 1.1 AY055846-1|AAL26542.2| 312|Tribolium castaneum cephalothorax pr... 23 2.0 AF426396-1|AAL27023.2| 312|Tribolium castaneum cephalothorax pr... 23 2.0 AF426395-1|AAL27022.2| 297|Tribolium castaneum cephalothorax pr... 23 2.0 AF416773-1|AAL09697.1| 268|Tribolium castaneum cephalothorax pr... 23 2.0 AF321227-2|AAK16422.1| 312|Tribolium castaneum Scr protein. 23 2.0 AF227628-1|AAF42868.1| 312|Tribolium castaneum sex combs reduce... 23 2.0 U14732-1|AAC46491.1| 322|Tribolium castaneum fushi-tarazu protein. 23 3.4 AY043293-2|AAK96034.1| 353|Tribolium castaneum homeodomain tran... 23 3.4 AY043292-2|AAK96032.1| 290|Tribolium castaneum homeodomain tran... 23 3.4 AF321227-1|AAK16421.1| 290|Tribolium castaneum Ftz protein. 23 3.4 AF231104-1|AAF64149.1| 142|Tribolium castaneum labial protein p... 23 3.4 AF231103-1|AAF64148.1| 142|Tribolium castaneum labial protein p... 23 3.4 AY043292-1|AAK96031.1| 323|Tribolium castaneum homeodomain tran... 21 8.0 AJ307577-1|CAC84070.1| 301|Tribolium castaneum dachshund protein. 21 8.0 AF264695-1|AAG13009.1| 100|Tribolium castaneum cephalothorax pr... 21 8.0 AF228509-1|AAF69136.1| 325|Tribolium castaneum prothoraxless pr... 21 8.0 >AY055847-1|AAL23667.2| 312|Tribolium castaneum cephalothorax protein. Length = 312 Score = 24.2 bits (50), Expect = 1.1 Identities = 25/102 (24%), Positives = 43/102 (42%) Frame = +1 Query: 304 PAKAAGTTQAKPLVAKVVVQAGHSNTDTSNQPAVLTKLLPSSNAGARYVMQQKTVPISIG 483 P K A +T ++ L + + S+T+ + +K SSN Y ++ + +G Sbjct: 154 PGKPATSTTSQNLSSPASSTSSTSSTEKAGTNNNNSKSSQSSNPPQIYPWMKR---VHLG 210 Query: 484 NKVLLSSPTKQGVKKQQIIAVKSSSTKXFNEKSFHIGKFLTR 609 S+ G K+Q + T EK FH ++LTR Sbjct: 211 Q----STVNANGETKRQRTSYTRYQTLEL-EKEFHFNRYLTR 247 >AY055846-1|AAL26542.2| 312|Tribolium castaneum cephalothorax protein. Length = 312 Score = 23.4 bits (48), Expect = 2.0 Identities = 25/102 (24%), Positives = 43/102 (42%) Frame = +1 Query: 304 PAKAAGTTQAKPLVAKVVVQAGHSNTDTSNQPAVLTKLLPSSNAGARYVMQQKTVPISIG 483 P K A +T ++ L + + S+T+ + +K SSN Y ++ + +G Sbjct: 154 PGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKR---VHLG 210 Query: 484 NKVLLSSPTKQGVKKQQIIAVKSSSTKXFNEKSFHIGKFLTR 609 S+ G K+Q + T EK FH ++LTR Sbjct: 211 Q----STVNANGETKRQRTSYTRYQTLEL-EKEFHFNRYLTR 247 >AF426396-1|AAL27023.2| 312|Tribolium castaneum cephalothorax protein. Length = 312 Score = 23.4 bits (48), Expect = 2.0 Identities = 25/102 (24%), Positives = 43/102 (42%) Frame = +1 Query: 304 PAKAAGTTQAKPLVAKVVVQAGHSNTDTSNQPAVLTKLLPSSNAGARYVMQQKTVPISIG 483 P K A +T ++ L + + S+T+ + +K SSN Y ++ + +G Sbjct: 154 PGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKR---VHLG 210 Query: 484 NKVLLSSPTKQGVKKQQIIAVKSSSTKXFNEKSFHIGKFLTR 609 S+ G K+Q + T EK FH ++LTR Sbjct: 211 Q----STVNANGETKRQRTSYTRYQTLEL-EKEFHFNRYLTR 247 >AF426395-1|AAL27022.2| 297|Tribolium castaneum cephalothorax protein. Length = 297 Score = 23.4 bits (48), Expect = 2.0 Identities = 25/102 (24%), Positives = 43/102 (42%) Frame = +1 Query: 304 PAKAAGTTQAKPLVAKVVVQAGHSNTDTSNQPAVLTKLLPSSNAGARYVMQQKTVPISIG 483 P K A +T ++ L + + S+T+ + +K SSN Y ++ + +G Sbjct: 154 PGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKR---VHLG 210 Query: 484 NKVLLSSPTKQGVKKQQIIAVKSSSTKXFNEKSFHIGKFLTR 609 S+ G K+Q + T EK FH ++LTR Sbjct: 211 Q----STVNANGETKRQRTSYTRYQTLEL-EKEFHFNRYLTR 247 >AF416773-1|AAL09697.1| 268|Tribolium castaneum cephalothorax protein. Length = 268 Score = 23.4 bits (48), Expect = 2.0 Identities = 25/102 (24%), Positives = 43/102 (42%) Frame = +1 Query: 304 PAKAAGTTQAKPLVAKVVVQAGHSNTDTSNQPAVLTKLLPSSNAGARYVMQQKTVPISIG 483 P K A +T ++ L + + S+T+ + +K SSN Y ++ + +G Sbjct: 110 PGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKR---VHLG 166 Query: 484 NKVLLSSPTKQGVKKQQIIAVKSSSTKXFNEKSFHIGKFLTR 609 S+ G K+Q + T EK FH ++LTR Sbjct: 167 Q----STVNANGETKRQRTSYTRYQTLEL-EKEFHFNRYLTR 203 >AF321227-2|AAK16422.1| 312|Tribolium castaneum Scr protein. Length = 312 Score = 23.4 bits (48), Expect = 2.0 Identities = 25/102 (24%), Positives = 43/102 (42%) Frame = +1 Query: 304 PAKAAGTTQAKPLVAKVVVQAGHSNTDTSNQPAVLTKLLPSSNAGARYVMQQKTVPISIG 483 P K A +T ++ L + + S+T+ + +K SSN Y ++ + +G Sbjct: 154 PGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKR---VHLG 210 Query: 484 NKVLLSSPTKQGVKKQQIIAVKSSSTKXFNEKSFHIGKFLTR 609 S+ G K+Q + T EK FH ++LTR Sbjct: 211 Q----STVNANGETKRQRTSYTRYQTLEL-EKEFHFNRYLTR 247 >AF227628-1|AAF42868.1| 312|Tribolium castaneum sex combs reduced Scr protein. Length = 312 Score = 23.4 bits (48), Expect = 2.0 Identities = 25/102 (24%), Positives = 43/102 (42%) Frame = +1 Query: 304 PAKAAGTTQAKPLVAKVVVQAGHSNTDTSNQPAVLTKLLPSSNAGARYVMQQKTVPISIG 483 P K A +T ++ L + + S+T+ + +K SSN Y ++ + +G Sbjct: 154 PGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKR---VHLG 210 Query: 484 NKVLLSSPTKQGVKKQQIIAVKSSSTKXFNEKSFHIGKFLTR 609 S+ G K+Q + T EK FH ++LTR Sbjct: 211 Q----STVNANGETKRQRTSYTRYQTLEL-EKEFHFNRYLTR 247 >U14732-1|AAC46491.1| 322|Tribolium castaneum fushi-tarazu protein. Length = 322 Score = 22.6 bits (46), Expect = 3.4 Identities = 8/12 (66%), Positives = 9/12 (75%) Frame = +1 Query: 574 EKSFHIGKFLTR 609 EK FH K+LTR Sbjct: 199 EKEFHFNKYLTR 210 >AY043293-2|AAK96034.1| 353|Tribolium castaneum homeodomain transcription factor Labialprotein. Length = 353 Score = 22.6 bits (46), Expect = 3.4 Identities = 8/12 (66%), Positives = 9/12 (75%) Frame = +1 Query: 574 EKSFHIGKFLTR 609 EK FH K+LTR Sbjct: 269 EKEFHFNKYLTR 280 >AY043292-2|AAK96032.1| 290|Tribolium castaneum homeodomain transcription factor Fushitarazu protein. Length = 290 Score = 22.6 bits (46), Expect = 3.4 Identities = 8/12 (66%), Positives = 9/12 (75%) Frame = +1 Query: 574 EKSFHIGKFLTR 609 EK FH K+LTR Sbjct: 199 EKEFHFNKYLTR 210 >AF321227-1|AAK16421.1| 290|Tribolium castaneum Ftz protein. Length = 290 Score = 22.6 bits (46), Expect = 3.4 Identities = 8/12 (66%), Positives = 9/12 (75%) Frame = +1 Query: 574 EKSFHIGKFLTR 609 EK FH K+LTR Sbjct: 199 EKEFHFNKYLTR 210 >AF231104-1|AAF64149.1| 142|Tribolium castaneum labial protein protein. Length = 142 Score = 22.6 bits (46), Expect = 3.4 Identities = 8/12 (66%), Positives = 9/12 (75%) Frame = +1 Query: 574 EKSFHIGKFLTR 609 EK FH K+LTR Sbjct: 58 EKEFHFNKYLTR 69 >AF231103-1|AAF64148.1| 142|Tribolium castaneum labial protein protein. Length = 142 Score = 22.6 bits (46), Expect = 3.4 Identities = 8/12 (66%), Positives = 9/12 (75%) Frame = +1 Query: 574 EKSFHIGKFLTR 609 EK FH K+LTR Sbjct: 58 EKEFHFNKYLTR 69 >AY043292-1|AAK96031.1| 323|Tribolium castaneum homeodomain transcription factor Prothoraxlessprotein. Length = 323 Score = 21.4 bits (43), Expect = 8.0 Identities = 7/12 (58%), Positives = 9/12 (75%) Frame = +1 Query: 574 EKSFHIGKFLTR 609 EK FH ++LTR Sbjct: 258 EKEFHFNRYLTR 269 >AJ307577-1|CAC84070.1| 301|Tribolium castaneum dachshund protein. Length = 301 Score = 21.4 bits (43), Expect = 8.0 Identities = 9/21 (42%), Positives = 12/21 (57%) Frame = +3 Query: 126 KSLSSRCTSKLKRQCCTSSNW 188 K LS + L R C T+S+W Sbjct: 17 KLLSCKDFDTLYRDCTTASSW 37 >AF264695-1|AAG13009.1| 100|Tribolium castaneum cephalothorax protein. Length = 100 Score = 21.4 bits (43), Expect = 8.0 Identities = 7/12 (58%), Positives = 9/12 (75%) Frame = +1 Query: 574 EKSFHIGKFLTR 609 EK FH ++LTR Sbjct: 24 EKEFHFNRYLTR 35 >AF228509-1|AAF69136.1| 325|Tribolium castaneum prothoraxless protein. Length = 325 Score = 21.4 bits (43), Expect = 8.0 Identities = 7/12 (58%), Positives = 9/12 (75%) Frame = +1 Query: 574 EKSFHIGKFLTR 609 EK FH ++LTR Sbjct: 260 EKEFHFNRYLTR 271 Database: tribolium Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 122,585 Number of sequences in database: 336 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 159,294 Number of Sequences: 336 Number of extensions: 3141 Number of successful extensions: 26 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 26 length of database: 122,585 effective HSP length: 56 effective length of database: 103,769 effective search space used: 20027417 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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