Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0504
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    30   0.40 
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    26   6.6  
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|...    26   6.6  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   8.7  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   8.7  
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    25   8.7  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    25   8.7  
SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces p...    25   8.7  

>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 34/108 (31%), Positives = 47/108 (43%)
 Frame = +1

Query: 280 NSDQAQLTPAKAAGTTQAKPLVAKVVVQAGHSNTDTSNQPAVLTKLLPSSNAGARYVMQQ 459
           NS  A  TP+K        P VA    Q G S+T     P+   K+LP+++A A   +Q+
Sbjct: 469 NSVTAPSTPSKVLPAMS--PKVAPKF-QGGRSST----APSTPNKVLPAASAKAAPKLQE 521

Query: 460 KTVPISIGNKVLLSSPTKQGVKKQQIIAVKSSSTKXFNEKSFHIGKFL 603
           K     I NK  + S TK  V     I    +S    ++ SF   K L
Sbjct: 522 KAASFDIPNKSTIIS-TKSTVASP--IKANENSPALKSKASFEFPKEL 566


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
 Frame = +1

Query: 274 RANSDQAQLTPAKAAGTTQAKPLVA-KVVVQAGHSNTDTSNQPAV---LTKLLPSSNAGA 441
           R NS  +    +K+  T     LV+ K  +      T + +QPA    L  LL    + +
Sbjct: 666 RVNSSNSNFQDSKSFSTLMDYELVSYKNELSELMYVTSSYSQPAYMEFLESLLAVITSSS 725

Query: 442 RYVMQQKTVPISIGNKVLLSSPTKQGVKK 528
            + +Q  T P    N+ LLS+ TK  V K
Sbjct: 726 VHPIQTLTAPRQSFNEDLLSANTKNSVYK 754


>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 530 CFLTPCL-VGEDSKTLFPIDIGTVFCCITYRAPALL 426
           C  TPC    +++  +FP+ I  +  C+T   P+LL
Sbjct: 226 CQFTPCFDSAKETDRIFPLYIKYLPPCVTLPVPSLL 261


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +3

Query: 60  RSGQAIRHRAETCYVCDE*KYKKSLSSRCTSKLKRQCCTS 179
           +SGQ  R    +C  C   K K      C++ LKR    S
Sbjct: 11  KSGQTSRRAIHSCLACRRKKLKCDHGRPCSNCLKRSTIQS 50


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = -2

Query: 563 FVEDDFTAIICCFLTPCLVGEDSKTLFPIDI-GTVFCCITYRAPALLDGNNFVSTAG 396
           F+ DDF  +     +      D    + I I  T F  IT+R    L  N+F+ T G
Sbjct: 637 FIRDDFDTVFFQSSSNPNYFTDVNPFWNIGIWSTTFNVITFRPGLSLPNNSFIKTQG 693


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 118 NTKKVSVAGVQANS-KGNAVLAQIGKQLVMVPAE 216
           N ++ + AG   N   GN+ L+Q+G   V VP E
Sbjct: 163 NFRETAPAGASKNMFHGNSTLSQVGGLSVAVPGE 196


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = -3

Query: 94  VSARWRIACPDRTWSSVWSSATG 26
           +   W++ CPDR     W +  G
Sbjct: 159 IEEHWQLLCPDREKVQTWQATLG 181


>SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 208

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 418 LPSSNAGARYVMQQKTVPISIGNKVLLSSPTKQGVKKQQII 540
           +P+SN  A  V   KTVP        +++ +K  VK+Q++I
Sbjct: 77  VPASNEKAARVSNLKTVPSLKRENKEVNANSKPPVKQQEVI 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,203
Number of Sequences: 5004
Number of extensions: 50559
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)