Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0504
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1114 - 9179614-9180167,9180223-9180544,9181524-9181820,918...    29   3.0  
01_03_0162 + 13342996-13344216                                         29   3.9  
11_01_0736 - 6209368-6209836,6210102-6210127                           29   5.2  
02_05_0510 + 29637160-29637506,29637714-29637775,29638047-296381...    28   6.9  

>06_01_1114 -
           9179614-9180167,9180223-9180544,9181524-9181820,
           9181991-9182878,9182896-9182941,9182964-9183350,
           9183648-9183985
          Length = 943

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
 Frame = +1

Query: 283 SDQAQLTPAKAAGTTQAKP-----LVAKVVVQAGHSNTDTSN-QPAVLT---KLLPSSNA 435
           ++ A L PA   G    +P      V  +  + G S  D     PA  T   K  PSS++
Sbjct: 314 AELASLVPANEIGRIPGQPDSSIENVKAITTRRGKSTRDPPYPNPAGTTGMSKEAPSSDS 373

Query: 436 GARYVMQQKTVPISIGNKVLLSSPTKQ 516
             + V  +KTVP   G+  LL  P ++
Sbjct: 374 ADKEVQPEKTVPQEYGDTRLLPFPQRR 400


>01_03_0162 + 13342996-13344216
          Length = 406

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = +1

Query: 133 SVAGVQANSKGNAVLAQIGKQLVMVPAEGAQKIKLVSAGSGATLQYVRAN----SDQAQL 300
           ++A   A  +  A+L   G  L  VPA  +  +  V  G G  +QY+  +      Q ++
Sbjct: 112 AIAAATARQEALALLDGGGLHLQHVPASASDAVAPVVGGHGVQVQYIGGSGGGGGSQQEM 171

Query: 301 TPA 309
           TPA
Sbjct: 172 TPA 174


>11_01_0736 - 6209368-6209836,6210102-6210127
          Length = 164

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -1

Query: 153 CLYTGY*DFFCIFIHHKRNRFRRDGVLLARTERGLRFGRLRQAGF 19
           C Y    D F     H+R  F+   V++ RT  G+RFG     G+
Sbjct: 16  CCYKATVDGFSATDFHRRCDFKGPCVVVGRTGGGVRFGGFSPEGY 60


>02_05_0510 + 29637160-29637506,29637714-29637775,29638047-29638161,
            29638296-29638419,29638604-29638684,29639122-29639463,
            29639562-29639728,29639810-29640639,29641103-29642568
          Length = 1177

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +1

Query: 232  KLVSAGSGAT-LQYVRANSDQ--AQLTPAKAAGTTQAKPLVAKVVVQAGHSNTD 384
            KLV  GSG+  L  +   S +  A LTP+ +A T    P   K  ++ G+S+TD
Sbjct: 1120 KLVPLGSGSQQLPRITITSVRYSAALTPSASAATVFVYPSEPKFNLEKGYSSTD 1173


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,238,167
Number of Sequences: 37544
Number of extensions: 338872
Number of successful extensions: 899
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)