Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0504
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57323| Best HMM Match : ShTK (HMM E-Value=0)                        37   0.020
SB_36157| Best HMM Match : 7tm_1 (HMM E-Value=4.8e-18)                 29   4.0  
SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)                 28   7.0  
SB_39845| Best HMM Match : Methyltransf_10 (HMM E-Value=0)             28   9.3  

>SB_57323| Best HMM Match : ShTK (HMM E-Value=0)
          Length = 911

 Score = 36.7 bits (81), Expect = 0.020
 Identities = 18/75 (24%), Positives = 39/75 (52%)
 Frame = +1

Query: 109 MNKNTKKVSVAGVQANSKGNAVLAQIGKQLVMVPAEGAQKIKLVSAGSGATLQYVRANSD 288
           + + T+K  +  ++  S  N+++  +G + ++   +G Q + LV    G  + Y  + +D
Sbjct: 151 VKRTTEKDYIRVMKPQSGCNSMVGVMGGEQILNMGDGCQYVGLVLHEFGHAIGYFHSTTD 210

Query: 289 QAQLTPAKAAGTTQA 333
           Q   TP+  +GTT +
Sbjct: 211 QTATTPSTFSGTTSS 225


>SB_36157| Best HMM Match : 7tm_1 (HMM E-Value=4.8e-18)
          Length = 474

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +1

Query: 280 NSDQAQLTPAKAAGTTQAKPLVAKVVVQAGHSNTDTSNQPAVLTKLLP 423
           N+ +A L PA+ A TT+++  +A +  + G+   D S  P     LLP
Sbjct: 321 NALKAALRPARVAATTESRNSIA-LAPRTGYEGDDLSRGPTPPFPLLP 367


>SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)
          Length = 667

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +1

Query: 133 SVAGVQANSKGNAVLAQIGKQLVMVPAEGAQKIKLVSAG 249
           S AG  A++ G+   A+ G++   VPAEGA++ + V  G
Sbjct: 120 SKAGEAASATGSDANAEGGEENAEVPAEGAERSEEVPEG 158


>SB_39845| Best HMM Match : Methyltransf_10 (HMM E-Value=0)
          Length = 493

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 509 VGEDSKTLFPIDIGTVFCCITYRAPALLDGNNFVST 402
           +GE ++ ++ +DIGT   CI     A +D  NF++T
Sbjct: 96  LGEVAEAVWGLDIGTGASCIYPLLGAAIDNWNFIAT 131


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,117,588
Number of Sequences: 59808
Number of extensions: 396739
Number of successful extensions: 866
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)