Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0504
         (750 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    25   1.9  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    23   7.6  
AF269153-1|AAF91398.1|  109|Anopheles gambiae labial homeotic pr...    23   7.6  

>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskeletal
            structural protein protein.
          Length = 1645

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +1

Query: 304  PAKAAGTTQAKPLVAKVVVQAGHSNTDTSNQPAVLTKLLPSSNAG 438
            PA AA ++ A  LVAKV   A     ++  QP V      S+ AG
Sbjct: 1335 PANAAPSSPAGVLVAKVPPVAVEDIENSKQQPPVQQTAATSAAAG 1379


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +1

Query: 253 GATLQYVRANSDQAQLTPAKAAGTTQAKPLVAKVVVQAGHSNTDTS 390
           GA L    + S     +P  A   + + P+VA      G SNT  S
Sbjct: 728 GAPLALTSSKSASTHPSPHPATRASPSSPIVATSSSGGGGSNTPNS 773


>AF269153-1|AAF91398.1|  109|Anopheles gambiae labial homeotic
           protein protein.
          Length = 109

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 9/77 (11%)
 Frame = +1

Query: 406 LTKLLPSSNAGARYVMQQKTVPISIGNKVLLSSPTKQGVKKQQIIAVKSSSTKXFN---- 573
           LTK L  S     ++      P+ + N   + +P+      Q    + ++ST   N    
Sbjct: 5   LTKSLQLSTTPEYHIPTXVLDPLRVPNHTTVVAPSAVS-PHQSSFMINNNSTGRTNFTNK 63

Query: 574 -----EKSFHIGKFLTR 609
                EK FH  K+LTR
Sbjct: 64  QLTELEKEFHFNKYLTR 80


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 715,558
Number of Sequences: 2352
Number of extensions: 14106
Number of successful extensions: 60
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 77339358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)