Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0504
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with... 33 0.16
L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with... 33 0.16
AC006808-4|AAF60815.3| 397|Caenorhabditis elegans Hypothetical ... 30 1.5
AC006808-3|AAT68889.1| 433|Caenorhabditis elegans Hypothetical ... 30 1.5
Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z81515-8|CAB54234.3| 692|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical pr... 28 6.2
U39646-7|AAA80371.1| 623|Caenorhabditis elegans Hypothetical pr... 28 6.2
U39646-6|AAK72058.1| 624|Caenorhabditis elegans Hypothetical pr... 28 6.2
U39646-5|AAK72057.1| 678|Caenorhabditis elegans Hypothetical pr... 28 6.2
>L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 2, isoform
b protein.
Length = 926
Score = 33.5 bits (73), Expect = 0.16
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +1
Query: 79 AIAPKPVTFVMNKNTKKVSVAGVQANSKGNAVLAQIGKQLVMVPAEGAQK-IKLVSAGSG 255
A A + + +MNK + + Q NS GN +++ + K L + AE A+ +K+++A S
Sbjct: 381 ASADEMMNDLMNKGFGCMKIEDNQQNSNGNGMVSFLDKSLKLDTAESAEPVVKVIAAASS 440
Query: 256 ATLQYVRANS 285
+R N+
Sbjct: 441 MKALELRGNT 450
>L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 2, isoform
a protein.
Length = 960
Score = 33.5 bits (73), Expect = 0.16
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +1
Query: 79 AIAPKPVTFVMNKNTKKVSVAGVQANSKGNAVLAQIGKQLVMVPAEGAQK-IKLVSAGSG 255
A A + + +MNK + + Q NS GN +++ + K L + AE A+ +K+++A S
Sbjct: 418 ASADEMMNDLMNKGFGCMKIEDNQQNSNGNGMVSFLDKSLKLDTAESAEPVVKVIAAASS 477
Query: 256 ATLQYVRANS 285
+R N+
Sbjct: 478 MKALELRGNT 487
>AC006808-4|AAF60815.3| 397|Caenorhabditis elegans Hypothetical
protein Y58G8A.4a protein.
Length = 397
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +1
Query: 400 AVLTKLLPSSNAGARYVMQQKTVPISIGNKVLLSSPTKQGVKKQQIIAV 546
+V+ L+P SN+ + +V IS+ + ++ PTKQ V +Q +A+
Sbjct: 125 SVMCHLVPLSNSCSVFVTSWSLTAISLDKFLHINDPTKQPVSIRQALAI 173
>AC006808-3|AAT68889.1| 433|Caenorhabditis elegans Hypothetical
protein Y58G8A.4b protein.
Length = 433
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +1
Query: 400 AVLTKLLPSSNAGARYVMQQKTVPISIGNKVLLSSPTKQGVKKQQIIAV 546
+V+ L+P SN+ + +V IS+ + ++ PTKQ V +Q +A+
Sbjct: 125 SVMCHLVPLSNSCSVFVTSWSLTAISLDKFLHINDPTKQPVSIRQALAI 173
>Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical protein
F26H11.2c protein.
Length = 2266
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +1
Query: 355 VVQAGHSNTDTSNQPAVLTKLLPSSNAGARYVMQQ--KTVPISIGNKVLLSSPTKQGVKK 528
V +A + D QP V+ + P+SN A+ QQ ++ P+ ++ + GVK
Sbjct: 1462 VTEAAIPDNDGDEQPPVIPRYDPTSNFDAQRAQQQHPQSRPVYSTPAQMIRTTQPGGVKH 1521
Query: 529 QQIIAVKSSSTK 564
I+ S T+
Sbjct: 1522 NVILMKASDGTQ 1533
>Z81515-8|CAB54234.3| 692|Caenorhabditis elegans Hypothetical
protein F26H11.2d protein.
Length = 692
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +1
Query: 355 VVQAGHSNTDTSNQPAVLTKLLPSSNAGARYVMQQ--KTVPISIGNKVLLSSPTKQGVKK 528
V +A + D QP V+ + P+SN A+ QQ ++ P+ ++ + GVK
Sbjct: 4 VTEAAIPDNDGDEQPPVIPRYDPTSNFDAQRAQQQHPQSRPVYSTPAQMIRTTQPGGVKH 63
Query: 529 QQIIAVKSSSTK 564
I+ S T+
Sbjct: 64 NVILMKASDGTQ 75
>Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical protein
F26H11.2b protein.
Length = 1693
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +1
Query: 355 VVQAGHSNTDTSNQPAVLTKLLPSSNAGARYVMQQ--KTVPISIGNKVLLSSPTKQGVKK 528
V +A + D QP V+ + P+SN A+ QQ ++ P+ ++ + GVK
Sbjct: 1462 VTEAAIPDNDGDEQPPVIPRYDPTSNFDAQRAQQQHPQSRPVYSTPAQMIRTTQPGGVKH 1521
Query: 529 QQIIAVKSSSTK 564
I+ S T+
Sbjct: 1522 NVILMKASDGTQ 1533
>Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical protein
F26H11.2a protein.
Length = 1691
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +1
Query: 355 VVQAGHSNTDTSNQPAVLTKLLPSSNAGARYVMQQ--KTVPISIGNKVLLSSPTKQGVKK 528
V +A + D QP V+ + P+SN A+ QQ ++ P+ ++ + GVK
Sbjct: 1462 VTEAAIPDNDGDEQPPVIPRYDPTSNFDAQRAQQQHPQSRPVYSTPAQMIRTTQPGGVKH 1521
Query: 529 QQIIAVKSSSTK 564
I+ S T+
Sbjct: 1522 NVILMKASDGTQ 1533
>U39646-7|AAA80371.1| 623|Caenorhabditis elegans Hypothetical
protein F47B7.2a protein.
Length = 623
Score = 28.3 bits (60), Expect = 6.2
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = +1
Query: 310 KAAGTTQAKPLVAKVVVQAG-HSNTDTSNQPAVLTKLLPSSNAGARYVMQQKTVPISIGN 486
K A TQ P+ K G H+ ++ L K SS+ ++V Q + IG+
Sbjct: 226 KVAYVTQNHPIATKFFSDGGVHALLFSNGNQEPLWK---SSSPVDKWVDVQDKIDELIGD 282
Query: 487 KVLLSSPTKQGVKKQQIIAVKSS 555
K+ S PT + +IA S+
Sbjct: 283 KIAASGPTVHPINAAPVIAAPSN 305
>U39646-6|AAK72058.1| 624|Caenorhabditis elegans Hypothetical
protein F47B7.2c protein.
Length = 624
Score = 28.3 bits (60), Expect = 6.2
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = +1
Query: 310 KAAGTTQAKPLVAKVVVQAG-HSNTDTSNQPAVLTKLLPSSNAGARYVMQQKTVPISIGN 486
K A TQ P+ K G H+ ++ L K SS+ ++V Q + IG+
Sbjct: 226 KVAYVTQNHPIATKFFSDGGVHALLFSNGNQEPLWK---SSSPVDKWVDVQDKIDELIGD 282
Query: 487 KVLLSSPTKQGVKKQQIIAVKSS 555
K+ S PT + +IA S+
Sbjct: 283 KIAASGPTVHPINAAPVIAAPSN 305
>U39646-5|AAK72057.1| 678|Caenorhabditis elegans Hypothetical
protein F47B7.2b protein.
Length = 678
Score = 28.3 bits (60), Expect = 6.2
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = +1
Query: 310 KAAGTTQAKPLVAKVVVQAG-HSNTDTSNQPAVLTKLLPSSNAGARYVMQQKTVPISIGN 486
K A TQ P+ K G H+ ++ L K SS+ ++V Q + IG+
Sbjct: 226 KVAYVTQNHPIATKFFSDGGVHALLFSNGNQEPLWK---SSSPVDKWVDVQDKIDELIGD 282
Query: 487 KVLLSSPTKQGVKKQQIIAVKSS 555
K+ S PT + +IA S+
Sbjct: 283 KIAASGPTVHPINAAPVIAAPSN 305
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,507,940
Number of Sequences: 27780
Number of extensions: 298995
Number of successful extensions: 833
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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