Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0504
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    24   1.8  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   3.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   4.0  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   4.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   4.0  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    22   5.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.3  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   9.3  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +1

Query: 370 HSNTDTSNQPAVLTKLLPSSNAGARYVMQQKTVPIS 477
           HSN   S+   +LT+     N   +Y     TVP +
Sbjct: 278 HSNRTNSDPRMILTEAYTEFNLTIKYYKSGSTVPFN 313


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 495 QNLISNRYRDGFLLHHVPGAR 433
           Q   S RY   + LHHV  +R
Sbjct: 427 QRFASGRYYSAYSLHHVRSSR 447


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/52 (23%), Positives = 22/52 (42%)
 Frame = +1

Query: 325 TQAKPLVAKVVVQAGHSNTDTSNQPAVLTKLLPSSNAGARYVMQQKTVPISI 480
           T +  L+ ++    G  NT+T        K +P +  G  +  + +   ISI
Sbjct: 130 TDSYKLIGRIAAGEGRFNTNTEVVINTEVKSIPVTKKGVYFAFRDQGACISI 181


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 625 VFRITFWLGIC 593
           VF + FWLG C
Sbjct: 43  VFSVLFWLGYC 53


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 625 VFRITFWLGIC 593
           VF + FWLG C
Sbjct: 491 VFSVLFWLGYC 501


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 411 C*YCRLITCIRV*VTR 364
           C YCRL  CI V ++R
Sbjct: 71  CQYCRLKKCIAVGMSR 86


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 411 C*YCRLITCIRV*VTR 364
           C YCRL  CI V ++R
Sbjct: 120 CQYCRLKKCIAVGMSR 135


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 574 EKSFHIGKFLTR 609
           EK FH  ++LTR
Sbjct: 24  EKEFHFNRYLTR 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,579
Number of Sequences: 438
Number of extensions: 3447
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)