Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0504
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g45145.1 68414.m05175 thioredoxin H-type 5 (TRX-H-5) (TOUL) i...    28   5.8  
At1g26610.1 68414.m03241 zinc finger (C2H2 type) family protein ...    28   5.8  

>At1g45145.1 68414.m05175 thioredoxin H-type 5 (TRX-H-5) (TOUL)
           identical to SP|Q39241 Thioredoxin H-type 5 (TRX-H-5)
           {Arabidopsis thaliana}; identical to cDNA (TOUL) mRNA
           for thioredoxin GI:992965
          Length = 118

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -3

Query: 709 FXCSWVRCPPCRMTLPSFV-ICPVFDGAVVFRI 614
           F  SW  CPPCR   P F  +   F   V F+I
Sbjct: 34  FTASW--CPPCRFIAPVFAEMAKKFTNVVFFKI 64


>At1g26610.1 68414.m03241 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 455

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 23/126 (18%), Positives = 53/126 (42%), Gaps = 1/126 (0%)
 Frame = +1

Query: 145 VQANSKGNAVLAQIGKQLVMVPAEGAQKIKLVSAGSGATLQYVRANSDQAQLTPAKAAGT 324
           + + S   A  + I ++   V  +   K   V  G+G   Q + A+SD +++ P +    
Sbjct: 123 MDSQSDTEASSSPIRRRSKRVVVKPHHKAAFVVGGNGIMNQSISASSDASEIEPEQEEMA 182

Query: 325 TQAKPLVAKVVVQAGHSN-TDTSNQPAVLTKLLPSSNAGARYVMQQKTVPISIGNKVLLS 501
                L      + GH++  ++S+  +V+ +   SS    +    +    +   NK+++ 
Sbjct: 183 RSLMMLSRDSSFKKGHNSLAESSDNNSVILETKSSSGEQVKMFNVKNVEELCKKNKLVVD 242

Query: 502 SPTKQG 519
           +  + G
Sbjct: 243 NQMRSG 248


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,434,819
Number of Sequences: 28952
Number of extensions: 265829
Number of successful extensions: 647
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)