Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0502
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)         84   1e-16
SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)         31   1.2  
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)              30   1.6  
SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31)          29   2.8  
SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84)           29   3.7  
SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)                 29   3.7  
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.7  
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)                    29   4.9  
SB_4321| Best HMM Match : Ank (HMM E-Value=0)                          28   6.5  
SB_29658| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0012)               28   6.5  
SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)              28   8.5  

>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
          Length = 50

 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 40/50 (80%), Positives = 43/50 (86%)
 Frame = +3

Query: 348 MRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQK 497
           MRGAFGKPQGTVARV IGQ I+S+R+ D  KA  IEALRRAKFKFPGRQK
Sbjct: 1   MRGAFGKPQGTVARVNIGQTIISIRTKDGNKAAAIEALRRAKFKFPGRQK 50


>SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1278

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -2

Query: 506 YVDLLTSGELELGTAQSLDDLCLPPVTRAHGHDGLSNANT--CYSTLRLAKRTT 351
           Y +  ++G   + T     D+C+P   + HGH    +ANT  CY  +  A  +T
Sbjct: 68  YAESCSAGHYVVRTGNPFTDICIP--CQCHGHSDQCDANTGICYVRIYTADLST 119


>SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)
          Length = 177

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +3

Query: 198 LEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLS 317
           L    I C  Y  KN  +D   +RM +HP H IRIN ++S
Sbjct: 115 LSYAHIFCGSYS-KNAAEDI--VRMSVHPLHPIRINGVVS 151


>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
          Length = 1023

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/73 (28%), Positives = 26/73 (35%)
 Frame = -1

Query: 399 QCEHVLQYPEACQTHHASQSGAYQLQRMITFY*CG*RGKGEVSCGYGTDPFRSSLRGTYC 220
           +C  V Q P AC   + S  GA +       Y C    K  V CG G          T C
Sbjct: 535 KCPDVTQAPVACTNGYYSGDGATECTLCPAGYSCADATKSPVPCGKGYYSTNGQTSCTEC 594

Query: 219 SRYVLPPKPLSSA 181
           S     P  L ++
Sbjct: 595 SAGFYCPVELGTS 607


>SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31)
          Length = 718

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 10  GAGQRDATGTAKINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTF 144
           G G    T     N++  +G V   LIP+   +I VR  +P T+F
Sbjct: 313 GNGTACYTVEGSFNQLAGKGYVEAALIPKGARNIRVREVKPCTSF 357


>SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 201 PKPLSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQ 85
           PK  SS V+  RT  AR    ++R++  Y  ++YG W Q
Sbjct: 295 PKFFSSIVYYGRT--ARFDYGKRRNMKRYGKKKYGKWRQ 331


>SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84)
          Length = 650

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 229 YLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 98
           Y+++QI+ ASK   L     + T C  + K S V  F+ K K R
Sbjct: 252 YIVKQIQVASKVKVLKAKLENQTLCQQT-KRSKVTDFISKQKSR 294


>SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)
          Length = 1273

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 229  YLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 98
            Y+++QI+ ASK   L     + T C  + K S V  F+ K K R
Sbjct: 1020 YIVKQIQVASKVKVLKAKLENQTLCQQT-KRSKVTDFISKQKSR 1062


>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2077

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/55 (21%), Positives = 26/55 (47%)
 Frame = +3

Query: 354  GAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKW 518
            G  G+P G+V  +      +++++  +W   + E++  A + FP       S+ W
Sbjct: 1109 GVDGRPSGSVEILGSRDSFVAIQNGRQWMLDIEESISIAFYVFPNNSLGNTSRNW 1163


>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
          Length = 883

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/79 (21%), Positives = 34/79 (43%)
 Frame = +1

Query: 385 HVFALDSPSCPCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVK 564
           HV A   P  P + +    + +S   A+ +SS+P +  S  Q +  + + N  S +  + 
Sbjct: 261 HVIANQHPPAPVSQLQSNSNNASAARAITTSSNPSISTSVLQGNLSTNARNTASPKPVIV 320

Query: 565 RAASLMTAALCSTAREHGP 621
            + ++      S A +  P
Sbjct: 321 NSQAVSIGNSSSPAPQVQP 339


>SB_4321| Best HMM Match : Ank (HMM E-Value=0)
          Length = 915

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +3

Query: 33  RYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 212
           R CK K   ++R C+G    + R+     K    D+  +C    SDE      E  +  R
Sbjct: 444 RMCKGKGRDETRMCKGEGTDETRMC----KSEGTDETRMCKDEGSDETRMCKDEGTDETR 499

Query: 213 IC 218
           +C
Sbjct: 500 MC 501


>SB_29658| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0012)
          Length = 450

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
 Frame = -1

Query: 288 GKGEVSCGYGTDPFRS-SLRGTYCSRYVLPPK----PLSSAVHIRRTPSARTVES----- 139
           G    + GY   P+ + S R  Y +   LPP+    P SS + ++  P   + E+     
Sbjct: 359 GNYSATPGYERVPYANGSERNGYYNGTYLPPQGVITPRSSPLTVQEDPMNGSRENGLSNG 418

Query: 138 -----RQRSLSSYPNRRYGSWDQVHPDR 70
                RQ    SY +RRYG ++  +PD+
Sbjct: 419 HSDSRRQPMRLSYDSRRYGGYEAYYPDQ 446


>SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)
          Length = 726

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +2

Query: 356 CVWQASGYCSTCSHWTAHHV 415
           C W  +G C  C HW   HV
Sbjct: 79  CYWIRTGCCHLCWHWRPLHV 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,004,811
Number of Sequences: 59808
Number of extensions: 546518
Number of successful extensions: 1783
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1782
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)