Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0501
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.8  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   5.0  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    25   8.7  

>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 391

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 673 WVRPKVSFNSRTFELEYL-CSATSLLFSFIRPSADAGLVVVDQAIR 539
           W+ P+ S  S  F  +     A SLLF   RP+ D  ++ V   I+
Sbjct: 299 WIFPRESVLSHVFNTDKKKLEALSLLFHVYRPTEDRNVIDVKTEIK 344


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +2

Query: 425 PQPSLHCIRQNGYFSHEDPKECGKFYFCVDGKFNMITCPDGLVYNDKTGI 574
           P   L  + +N Y    DPK   +F F  DG  +  T  D L   D+  I
Sbjct: 723 PTRGLKMLSENEYVDINDPKAIAEFLFRADG-IDKTTLGDYLGEGDEKSI 771


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 618 QRYSSSNVRLLNETFGLTHPRY 683
           QRY++  +R L + F  T+PRY
Sbjct: 461 QRYTTEEMRALAKRFRETYPRY 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,154,516
Number of Sequences: 5004
Number of extensions: 67177
Number of successful extensions: 174
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)