Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0501
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0914 - 7693305-7693513,7693613-7694111,7694716-7696316,769...    29   3.9  
11_06_0032 + 19432305-19432510,19433390-19434326,19434880-194349...    28   6.9  
06_03_0901 - 25800317-25800403,25800420-25800674,25800817-258010...    28   9.1  
02_04_0480 - 23274945-23275196,23275558-23275623,23276709-232768...    28   9.1  

>07_01_0914 -
           7693305-7693513,7693613-7694111,7694716-7696316,
           7696509-7696530
          Length = 776

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = -2

Query: 371 SLPVDCSR*TPYRLGKVSQLYHHPCIHNICHTVRRQQSIHLQDISS*SPGQPRSLLWHEL 192
           ++ V+ ++ +   +G  S  + +  + N+ H V  +Q+    D SS  PG       H +
Sbjct: 393 TMAVEIAQGSRQAIGVTSMAFLYRALDNVYHQVAARQA-SASDCSSFVPG-------HFI 444

Query: 191 GGWQASFW 168
            GW ASFW
Sbjct: 445 MGWFASFW 452


>11_06_0032 +
           19432305-19432510,19433390-19434326,19434880-19434975,
           19435518-19435654,19435888-19436056
          Length = 514

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 545 GLVYNDKTGICTWPDEAKKKGCGAAEVFQ 631
           G  Y  +  IC  PD AK +GC   EV +
Sbjct: 110 GSAYGGQRSICCTPDLAKLEGCKQGEVIR 138


>06_03_0901 -
           25800317-25800403,25800420-25800674,25800817-25801043,
           25801773-25801929,25802977-25803159
          Length = 302

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 311 YHHPCIHNICHTVRRQQSIHLQDISS*SPGQPRSLL 204
           +HHP   + C +  R++  HL  +SS  PG    LL
Sbjct: 29  HHHPAKRS-CRSPHRRREAHLHHLSSLFPGMDPQLL 63


>02_04_0480 -
           23274945-23275196,23275558-23275623,23276709-23276851,
           23276947-23277063,23277219-23278683,23279561-23280730
          Length = 1070

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -3

Query: 418 KLGSLRAVQVER*ITFLFLWTVVVEHHTV-WAKFLNYITTPAFIIFVTLFGV 266
           K   +R   V+  + F   W   V  H + W +FL +  TP     V +FG+
Sbjct: 416 KCSKIRLSVVDGSLAFYEGWNSFVSEHCIKWGEFLLFEYTPESTFSVRVFGI 467


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,677,915
Number of Sequences: 37544
Number of extensions: 480868
Number of successful extensions: 1085
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)