Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0501
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.76 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   4.0  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   7.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 473 EDPKECGKFYFCVDGK 520
           ED K   K YFC+DGK
Sbjct: 419 EDWKPLDKCYFCLDGK 434



 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 401  SQRPKLQTPQPSLHCIRQNGYFSHEDPKECG 493
            SQ+P+ Q PQP     +Q      +  KE G
Sbjct: 1521 SQQPQQQQPQPQQQQQQQQQQQPQQQQKEYG 1551


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 467 RSSHFDEYSGGKVEVFEAWVSE 402
           +SS FD  +  +V+ +E WV +
Sbjct: 98  KSSEFDSINSIRVKSYEIWVPD 119


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 464 SSHFDEYSGGKVEV 423
           S HF EY G  +E+
Sbjct: 335 SEHFFEYGGNNIEI 348


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 331 WAKFLNYITTPAFIIFVTLFGVSK 260
           W K    ITTPA  + V  F + K
Sbjct: 490 WWKICWTITTPAICVGVFTFNIIK 513


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 331 WAKFLNYITTPAFIIFVTLFGVSK 260
           W K    ITTPA  + V  F + K
Sbjct: 543 WWKICWTITTPAICVGVFTFNIIK 566


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,624
Number of Sequences: 438
Number of extensions: 4972
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)