Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0501
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24680.1 68417.m03533 expressed protein                             32   0.47 
At1g20940.1 68414.m02622 F-box family protein contains Pfam:PF00...    31   1.1  
At2g01070.1 68415.m00013 expressed protein similar to membrane p...    30   1.9  
At2g35780.1 68415.m04390 serine carboxypeptidase S10 family prot...    29   2.5  
At3g30700.1 68416.m03892 hypothetical protein                          29   3.3  
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ...    29   4.4  
At3g30690.1 68416.m03890 hypothetical protein                          29   4.4  
At2g33490.1 68415.m04105 hydroxyproline-rich glycoprotein family...    29   4.4  
At4g01930.1 68417.m00257 DC1 domain-containing protein contains ...    28   5.8  
At1g40390.1 68414.m04790 hypothetical protein                          28   5.8  
At5g32169.1 68418.m03692 hypothetical protein                          28   7.6  
At1g36763.1 68414.m04575 hypothetical protein                          28   7.6  

>At4g24680.1 68417.m03533 expressed protein
          Length = 1480

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 543 MAWSTTTRPASALGLMKLKRRDVALQRYSSSNVR 644
           +AW + +RP+SA G+    +  VALQR  S++ R
Sbjct: 109 VAWDSNSRPSSASGVFPSNQPSVALQRPHSADTR 142


>At1g20940.1 68414.m02622 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 414

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 706 TDNRQGPAYRGWVRPKVSFNSRTFELEYLC 617
           +D R GP Y  WVRP + FN  ++   Y+C
Sbjct: 51  SDPRFGPEYPSWVRPSL-FNLGSYGATYVC 79


>At2g01070.1 68415.m00013 expressed protein similar to membrane
           protein PTM1 precursor isolog GB:AAB65479
          Length = 496

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 545 GLVYNDKTGICTWPDEAKKKGCGAAEVFQFECP 643
           G  Y  +  IC  PD AK +GC   E+ +   P
Sbjct: 98  GSAYGGQRSICCTPDLAKLQGCKQGEIIRIPSP 130


>At2g35780.1 68415.m04390 serine carboxypeptidase S10 family protein
           similar to Serine carboxypeptidase II chains A and B
           (SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)];
          Length = 452

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
 Frame = -2

Query: 530 SC*ISHQRKSRIYRIP*DPRERS-SHFDEY-----SGGKVEVFEAWVSESSP 393
           SC    Q K RI+ +P +P + S SHF  Y     S G+   +  W++ES P
Sbjct: 19  SCSRHEQEKDRIFHLPGEPNDVSFSHFSGYITVNESAGRALFY--WLTESPP 68


>At3g30700.1 68416.m03892 hypothetical protein
          Length = 206

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = -1

Query: 714 VEELTIVRVRHTEGGSDRRFHLTAGHSNWNTSAAPHPFFLASSGQVQMPVL 562
           +EE  ++   H+   S R F ++  HS   +S   H F      +V+ P L
Sbjct: 26  LEEADLITTNHSTKRSSRSFRISRDHSTHRSSRGHHHFTSPLDHEVECPHL 76


>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 989

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = +2

Query: 371 KCDLPFNLDCSQRP-KLQTPQP---SLHCIRQNGYFSHEDPKEC-GKFYFC 508
           +C LPF++DC  RP +L+ P     S H +      S + P  C GK   C
Sbjct: 186 ECQLPFHVDCVWRPSELKHPSEVNHSYHSLHPLKLLSGQLPDNCDGKCRLC 236


>At3g30690.1 68416.m03890 hypothetical protein
          Length = 206

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -1

Query: 738 GGLPLIPN-VEELTIVRVRHTEGGSDRRFHLTAGHSNWNTSAAPHPFFLASSGQVQMPVL 562
           G L L+ + ++E  ++   H+   S R F ++  HS   +S   H F      +++ P L
Sbjct: 17  GDLELLTSYLQEADLITTNHSTKRSSRSFRISRDHSTHRSSRGHHHFTSPLDHEIECPHL 76


>At2g33490.1 68415.m04105 hydroxyproline-rich glycoprotein family
           protein Common family member:At3g26910 [Arabidopsis
           thaliana]
          Length = 623

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
 Frame = +3

Query: 150 QHSHLKPE-RSLPTPQLVPEKRARLTRRSRTYVL--KMDTLLTPNSVTN--IMNAGVVI* 314
           Q + L PE R+ P  + +   R+ LTR+  TY L   ++T  +P+S T+    N G    
Sbjct: 330 QSAPLFPENRTTPPSEKLLRMRSTLTRKFNTYALPTPVETTRSPSSTTSPGHKNVGSSNP 389

Query: 315 LRNFAQTVWCSTTTVHRKRNVIYLSTWTALRDPSFKHLN 431
            +   + +W S+    R    +   +  AL++   +  N
Sbjct: 390 TKAITKQIWYSSPLETRGPAKVSSRSMVALKEQVLRESN 428


>At4g01930.1 68417.m00257 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 652

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +2

Query: 335 GMVFNDYSPQEEKCDLPFNLDCSQRP 412
           G +  ++S + ++CDL F++DC+ RP
Sbjct: 141 GKLSYEFSYKCQECDLAFHVDCAWRP 166


>At1g40390.1 68414.m04790 hypothetical protein
          Length = 426

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -1

Query: 738 GGLPLIPN-VEELTIVRVRHTEGGSDRRFHLTAGHSNWNTSAAPHPFFLASSGQVQMPVL 562
           G L L+ + +EE  ++  +H+   S R F ++  HS   +S   H F      +V+ P L
Sbjct: 335 GDLELLTSYLEEADLIMSKHSTPRSTRSFKISRDHSTPRSSRRNHHFTSPLDHEVECPHL 394


>At5g32169.1 68418.m03692 hypothetical protein
          Length = 258

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -1

Query: 738 GGLPLIPN-VEELTIVRVRHTEGGSDRRFHLTAGHSNWNTSAAPHPFFLASSGQVQMPVL 562
           G L L+ + +EE  ++   H+   S R F ++  HS   +    H F      +V+ P L
Sbjct: 17  GDLELLTSYLEEADLIMTNHSTQRSSRSFKISRDHSTTRSRRGHHHFTSPLDPEVECPRL 76


>At1g36763.1 68414.m04575 hypothetical protein
          Length = 104

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -1

Query: 684 HTEGGSDRRFHLTAGHSNWNTSAAPHPFFLASSGQVQMPVLSL*TKPSGQV 532
           H+   S R F ++  HS   +S   H F      QV+ P+L L T P  +V
Sbjct: 4   HSTQRSSRSFKISRDHSTPRSSRRHHQFTSPLDHQVE-PLLDLITPPGSRV 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,990,963
Number of Sequences: 28952
Number of extensions: 374305
Number of successful extensions: 839
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)