Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0500
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    29   0.48 
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    27   2.0  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    27   2.6  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    26   4.5  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    26   6.0  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    25   7.9  
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom...    25   7.9  

>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +1

Query: 16  RGPLKTTMDVINAAKKISEAGTKLDKLTREIAEQCPESSTKQDLLAYLQ-RIALYCHQIQ 192
           +  LK    +    K +SEA TKL +L  + A    + S  +++   L+ + + +  +I 
Sbjct: 57  KNELKLNNTIKQLKKSLSEAETKLKRLDEKQATPELQVSDSKEMEEQLELQKSQFEKRIS 116

Query: 193 ITSKVKADVQNISGELIVSGLD 258
           I  K K D+Q    EL V  ++
Sbjct: 117 ILEKEKEDLQRKMEELTVESME 138


>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 400 PEKKPLIRPEKPEEVRAKVRRGSQK 474
           P KKPL+ P  P+E    +RR  Q+
Sbjct: 288 PPKKPLVSPILPKEAELDLRRNLQR 312


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +1

Query: 388 RMKAPEKKPLIRPEKPEEVRAKVRRGSQKKQPSPIHALAEFQSPADSV*VQKSIKINI 561
           + KAP KK  ++P K EE +  V   ++  + S + +     SP  +    KS+ +++
Sbjct: 506 KAKAPTKKSKVKPSKQEESKVVVPSNAKAVKKSVVPSSPVVPSPRKA--TNKSLSMDV 561


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 22/56 (39%), Positives = 27/56 (48%)
 Frame = -3

Query: 476 FFWLPRRTFALTSSGFSGLMRGFFSGAFMRQTTIGDAMVPWRVYLVEATYEAFTVS 309
           FF L    FAL  S FS  +  FFS  + RQT I      W V+ +  TY A  +S
Sbjct: 138 FFVLLAYDFALRKSAFSSSVSCFFS-LWFRQTNI-----VWMVF-IAVTYFASNMS 186


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1347

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +1

Query: 418  IRPEKPEEVRAKVRRGSQKKQPSPIHALAEFQS--PADSV*VQKSIKI 555
            I  E+ EE+ ++ RR S +K    I    EFQ     +S+ VQK + I
Sbjct: 1240 IMTEQKEEIESQKRRSSFRKTIEEIQQEEEFQKWWEEESLRVQKELGI 1287


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 12  RSRPPENHHGRNKRRQEDIRSR-NQTG*ADQGDRRAVSRILH*TRLARLPPTDRS 173
           RS P  + H R++RR E+  SR ++    D  D R   R  H  + +R  P +RS
Sbjct: 176 RSPPYSSRHSRSRRRYEERSSRSSRAHDYDYEDLRDDDR-SHERKRSRSRPRERS 229


>SPAC1486.09 |||ribosome biogenesis protein Nob1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +1

Query: 403 EKKPLIRPEKPEEVRAKVRRGSQKKQ 480
           +K P++R ++PE  RA VRR  +KK+
Sbjct: 324 KKNPVLREDQPEYQRA-VRRMQRKKE 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,332,871
Number of Sequences: 5004
Number of extensions: 40378
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)