Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0500
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0826 + 20103105-20103697,20104222-20104391,20104487-201047... 33 0.29
01_07_0237 + 42204301-42205200,42205356-42206030 33 0.29
02_04_0376 - 22474473-22476947 31 0.88
10_08_0573 + 18872720-18872781,18873261-18873610,18873917-188743... 31 1.2
09_06_0373 + 22632638-22633195,22633279-22633485,22633583-226337... 29 3.5
08_01_0793 - 7685702-7686955 29 4.7
04_03_0187 + 12436934-12437108,12438020-12439044 29 4.7
03_01_0061 + 490037-490045,490121-490302,490551-490671,491933-49... 29 4.7
12_02_0925 - 24398851-24398998,24399478-24399718,24399886-244005... 28 8.2
09_04_0623 - 19038777-19040561 28 8.2
09_04_0256 + 16148820-16148998,16149547-16150241,16150317-161505... 28 8.2
08_02_1592 + 28078055-28078966 28 8.2
08_02_0071 - 11910629-11910883,11912716-11913081 28 8.2
07_03_0014 - 12428713-12428860,12429340-12429580,12429664-124303... 28 8.2
06_01_1173 + 10014391-10014678,10015478-10017245,10017333-100174... 28 8.2
05_01_0595 + 5344721-5345249,5349183-5349264,5349813-5350507,535... 28 8.2
03_03_0039 - 13986844-13986907,13987219-13987273,13987492-139876... 28 8.2
03_01_0125 + 977572-977879,978155-978275,979673-979846,979985-98... 28 8.2
02_05_1149 + 34471730-34471790,34471975-34472056,34472605-344732... 28 8.2
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026... 28 8.2
01_01_1009 + 7992040-7992287,7992747-7993144,7993301-7993441,799... 28 8.2
>04_03_0826 +
20103105-20103697,20104222-20104391,20104487-20104716,
20104825-20104933,20104967-20105154,20105818-20105919,
20106114-20106395,20106504-20106625,20106708-20107020,
20107096-20107329,20107477-20107767,20107975-20108286
Length = 981
Score = 32.7 bits (71), Expect = 0.29
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 2/133 (1%)
Frame = +1
Query: 64 ISEAGTK--LDKLTREIAEQCPESSTKQDLLAYLQRIALYCHQIQITSKVKADVQNISGE 237
I EAG++ ++ R+ EQC S D R H++ +T+KVK + E
Sbjct: 515 IDEAGSRARMESFKRKKEEQCSILSKSPDEYWQEIRAVQNMHEVALTNKVKYSLNQNDQE 574
Query: 238 LIVSGLDSATSLIQAAKNLMNAVVLTVKASYVASTKYTRQGTIASPIVVWRMKAPEKKPL 417
V A L + T K S V S + R ++ S I V ++ A E+K L
Sbjct: 575 DAVDIELVGEDKTSPASMLSTS---TDKPSLVGSEEIARVTSLWSGIPVQQLTADERKLL 631
Query: 418 IRPEKPEEVRAKV 456
+ + +E+R +V
Sbjct: 632 VGLD--DELRKRV 642
>01_07_0237 + 42204301-42205200,42205356-42206030
Length = 524
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 360 PLAGVLGGGDVRSLHGEHDRIHQVLGRLDQGRRAVQPAHDE 238
PLA VLGG +R+ H+++HQ+ + QG DE
Sbjct: 226 PLARVLGGRSLRTTKRVHEKLHQITEAIIQGHGIKDTVGDE 266
>02_04_0376 - 22474473-22476947
Length = 824
Score = 31.1 bits (67), Expect = 0.88
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Frame = -3
Query: 521 AGLWNSARAWIGLGCFFWLPRRTFALTSSGFSGLMRGFF-SGAFMRQTTIGDAMVPWRVY 345
AG+W + G F + + F S +S ++ GF G T++ M +
Sbjct: 643 AGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSIS 702
Query: 344 LVEATYEAFTVSTTAFIRFLAAWI 273
L E Y A R+L AW+
Sbjct: 703 LNEDIYTALVTCFCKSKRYLDAWV 726
>10_08_0573 + 18872720-18872781,18873261-18873610,18873917-18874334,
18875172-18877180,18877390-18877398,18880291-18880398,
18880399-18880469,18880769-18881785
Length = 1347
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Frame = +1
Query: 82 KLDKLTR-EIAE----QCPESSTKQDLLAYLQRIALYCHQIQITSKVKADVQNISGELIV 246
KL L R EI+E Q S + A +R AL H + A++ N++GEL++
Sbjct: 925 KLTSLERLEISECGSIQSLPSKVSESRFAISKRSALSIHTCKKGIGELANLNNLNGELLI 984
Query: 247 SGLDSATSLIQA 282
SGL+ + +A
Sbjct: 985 SGLEHVNDMEEA 996
>09_06_0373 +
22632638-22633195,22633279-22633485,22633583-22633798,
22635375-22635441,22635531-22635677,22635811-22635906,
22636530-22636642,22636732-22636868,22637096-22637336
Length = 593
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 261 RDVPDPGGQEPDECGRAHREGFVRRLHQVHPPGDHRVSDSGL 386
RD+P G +EPDE G+ R +L ++ HR+ D+GL
Sbjct: 48 RDLPLFGRREPDEYGKVFR--IYTQLWRMQQEHRHRLLDAGL 87
>08_01_0793 - 7685702-7686955
Length = 417
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +1
Query: 421 RPEKPEEVRAKVRRGSQKKQPSPIHALAEFQSPADSV*VQKSIKINIENVLK 576
RPE ++ +AK++ +K PSP+ Q D V +++K+ E VLK
Sbjct: 313 RPEGQKKAKAKLKGKGKKPAPSPLGD----QPSQDFVLFNEAVKLRAEAVLK 360
>04_03_0187 + 12436934-12437108,12438020-12439044
Length = 399
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +1
Query: 421 RPEKPEEVRAKVRRGSQKKQPSPIHALAEFQSPADSV*VQKSIKINIENVLK 576
RPE ++ +AK++ +K PSP+ Q D V +++K+ E VLK
Sbjct: 295 RPEGQKKAKAKLKGKGKKPAPSPLGD----QPSQDFVLFNEAVKLRAEAVLK 342
>03_01_0061 +
490037-490045,490121-490302,490551-490671,491933-492106,
492246-492409,492506-492593,492687-492740,492837-492917,
493075-493083
Length = 293
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +1
Query: 40 DVINAAKKISEAGTKLDKLTREIAEQCPESSTKQDLL-AYLQRI---ALYCHQIQI 195
DVI++ K+I LD ++ + CPE + L+ +YL +I YCH ++
Sbjct: 67 DVIHSEKRIGLVFEYLDLDLKKFMDSCPEFAKNPTLIKSYLYQILRGVAYCHSHRV 122
>12_02_0925 -
24398851-24398998,24399478-24399718,24399886-24400536,
24400625-24400828,24400902-24401583,24401678-24401934,
24402010-24402704,24403150-24403397
Length = 1041
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 315 REGFVRRLHQVHPPGDHRVSDSGLAHEGPR 404
RE F R L ++ GD R SDSG E R
Sbjct: 143 REFFCRELDRIKDAGDQRKSDSGRRVEAAR 172
>09_04_0623 - 19038777-19040561
Length = 594
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 340 TKYTRQGTIASPIVVWRMKAPEKKPLIRPE 429
+K+T +G A +V W + AP P++ E
Sbjct: 519 SKFTAEGFTAPEVVFWNVGAPASAPVVATE 548
>09_04_0256 +
16148820-16148998,16149547-16150241,16150317-16150573,
16150668-16151349,16151423-16151626,16151715-16152449,
16152533-16152698,16153253-16153400
Length = 1021
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 315 REGFVRRLHQVHPPGDHRVSDSGLAHEGPR 404
RE F R L ++ GD R SDSG E R
Sbjct: 120 REFFCRELDRIKDAGDQRKSDSGRRVEAAR 149
>08_02_1592 + 28078055-28078966
Length = 303
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +1
Query: 421 RPEKPEEVRAKVRRGSQKKQPSPIHALAEFQSPADSV*VQKSIKINIENVLK 576
RPE ++ + K++ +K PSP+ Q D V + +++K+ E VLK
Sbjct: 199 RPEGQKKAKVKLKGKGKKHAPSPLGD----QPSQDFVLLNEAVKLRAEAVLK 246
>08_02_0071 - 11910629-11910883,11912716-11913081
Length = 206
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/22 (45%), Positives = 19/22 (86%)
Frame = -2
Query: 336 GDVRSLHGEHDRIHQVLGRLDQ 271
G+++++HG H R+HQVL R+++
Sbjct: 109 GNMKAVHG-HKRVHQVLPRMER 129
>07_03_0014 -
12428713-12428860,12429340-12429580,12429664-12430398,
12430487-12430690,12430764-12431445,12431540-12431796,
12431872-12432566,12433012-12433172,12434039-12434383,
12434399-12434631,12434656-12434740
Length = 1261
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 315 REGFVRRLHQVHPPGDHRVSDSGLAHEGPR 404
RE F R L ++ GD R SDSG E R
Sbjct: 335 REFFCRELDRIKDAGDQRKSDSGRRVEAAR 364
>06_01_1173 +
10014391-10014678,10015478-10017245,10017333-10017436,
10017632-10017706,10017887-10017918,10019396-10019482,
10020848-10021294,10021477-10021630,10022203-10022329,
10022547-10022632,10022719-10022790,10023083-10023286,
10023732-10024049
Length = 1253
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +2
Query: 98 PGRSPSS--VPNPPLNKTCSPTSNGS 169
PGR PS V P N+ C+P+ NGS
Sbjct: 80 PGRFPSQRVVAVPERNQACNPSGNGS 105
>05_01_0595 +
5344721-5345249,5349183-5349264,5349813-5350507,
5350583-5350839,5350934-5351615,5351689-5351892,
5351981-5352715,5352799-5353181
Length = 1188
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 315 REGFVRRLHQVHPPGDHRVSDSGLAHEGPR 404
RE F R L ++ GD R SDSG E R
Sbjct: 264 REFFCRELDRIKDAGDQRKSDSGRRVEAAR 293
>03_03_0039 -
13986844-13986907,13987219-13987273,13987492-13987606,
13987652-13987774,13987962-13988015,13988352-13988411,
13988522-13988584,13988790-13988863,13989177-13989261,
13989376-13989456,13989764-13989856,13990275-13990339,
13990407-13990482,13990570-13990635,13991094-13991153,
13991233-13991322,13991755-13991817,13992502-13992625,
13993031-13993271,13993355-13993624,13993715-13994089,
13994178-13994381,13994455-13995136,13995231-13995279,
13995362-13995488,13995564-13996258,13996718-13996965
Length = 1433
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 315 REGFVRRLHQVHPPGDHRVSDSGLAHEGPR 404
RE F R L ++ GD R SDSG E R
Sbjct: 143 REFFCRELDRIKDAGDQRKSDSGRRVEAAR 172
>03_01_0125 +
977572-977879,978155-978275,979673-979846,979985-980148,
980245-980332,980426-980479,980571-980651,980895-981068
Length = 387
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +1
Query: 40 DVINAAKKISEAGTKLDKLTREIAEQCPESSTKQDLL-AYLQRI---ALYCHQIQI 195
DVI++ K+I LD ++ + CPE + L+ +YL +I YCH ++
Sbjct: 106 DVIHSEKRIYLVFEYLDLDLKKFMDSCPEFAKNPTLIKSYLYQILRGVAYCHSHRV 161
>02_05_1149 +
34471730-34471790,34471975-34472056,34472605-34473299,
34473375-34473631,34473726-34474407,34474481-34474684,
34474773-34474903,34475068-34475263,34475347-34475587,
34476067-34476214
Length = 898
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 315 REGFVRRLHQVHPPGDHRVSDSGLAHEGPR 404
RE F R L ++ GD R SDSG E R
Sbjct: 108 REFFCRELDRIKDAGDQRKSDSGRRVEAAR 137
>01_05_0117 - 18300157-18301106,18301149-18301543,18302592-18302681,
18303723-18303836,18303903-18304046,18316147-18316312,
18316396-18317130,18317219-18317422,18317496-18318177,
18318272-18318528,18318604-18319298,18319345-18319382,
18319847-18319928,18320018-18320112,18320443-18320526,
18320601-18320891,18321521-18321853,18321948-18322150,
18322243-18322399,18322482-18322585,18322675-18322835,
18323511-18323824,18324317-18324589,18324666-18324967,
18325459-18325549,18326140-18326190,18326700-18326768,
18326926-18327017,18327082-18327148,18328582-18328746,
18329027-18329103,18329572-18329766,18330208-18330275,
18331081-18331172,18331399-18331522,18331608-18331705,
18332384-18332997,18333620-18333626
Length = 2892
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 315 REGFVRRLHQVHPPGDHRVSDSGLAHEGPR 404
RE F R L ++ GD R SDSG E R
Sbjct: 1476 REFFCRELDRIKDAGDQRKSDSGRRVEAAR 1505
>01_01_1009 +
7992040-7992287,7992747-7993144,7993301-7993441,
7993517-7993773,7993868-7994169,7994342-7994580,
7994654-7994857,7994946-7995680,7995764-7996155
Length = 971
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 315 REGFVRRLHQVHPPGDHRVSDSGLAHEGPR 404
RE F R L ++ GD R SDSG E R
Sbjct: 143 REFFCRELDRIKDAGDQRKSDSGRRVEAAR 172
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,196,179
Number of Sequences: 37544
Number of extensions: 337570
Number of successful extensions: 1294
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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