Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0500
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_5629| Best HMM Match : PAX (HMM E-Value=0) 33 0.29
SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077) 31 1.2
SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006) 30 1.6
SB_10566| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_41786| Best HMM Match : AT_hook (HMM E-Value=0.24) 29 4.8
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_17138| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_50283| Best HMM Match : F-box (HMM E-Value=0.00036) 28 6.3
SB_21719| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43) 28 8.4
SB_3894| Best HMM Match : SOUL (HMM E-Value=1.4e-10) 28 8.4
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/59 (37%), Positives = 33/59 (55%)
Frame = +1
Query: 37 MDVINAAKKISEAGTKLDKLTREIAEQCPESSTKQDLLAYLQRIALYCHQIQITSKVKA 213
M +IN +K I+E G + K +A QC + ++ DLL Y + I Q++I S VKA
Sbjct: 2561 MGMINTSKAIAENGKVILKFAHVLANQCVDERSRNDLLYYAEYIPTMSTQLKIISSVKA 2619
>SB_5629| Best HMM Match : PAX (HMM E-Value=0)
Length = 383
Score = 32.7 bits (71), Expect = 0.29
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Frame = +1
Query: 58 KKISEAGTKLDKLTREIAEQCPESSTK-QDLLAYLQRIALYCHQIQ-------ITSKVKA 213
+K+SE + ++T E+ E+C E + ++L AY + Y H IQ +K
Sbjct: 178 RKVSEGEKDVGRMTEEVKEECEEVLYETRELFAYRPPMPQYRHSIQEILMPSPTVNKPFF 237
Query: 214 DVQNISGELIVSGLDSATS 270
+ SGE V+ +DSA S
Sbjct: 238 YLTESSGEESVASIDSADS 256
>SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077)
Length = 1043
Score = 30.7 bits (66), Expect = 1.2
Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 4/117 (3%)
Frame = +1
Query: 193 ITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKASYVASTKYTRQGTIAS 372
+ S K D + G + L+ L + K L TV+ +S + T Q A
Sbjct: 294 VLSSEKDDNARVKGPCRLEDLEQQV-LSKQEKQLKKEPADTVEDKPPSSQESTGQDMAAF 352
Query: 373 PIVVWRMKA----PEKKPLIRPEKPEEVRAKVRRGSQKKQPSPIHALAEFQSPADSV 531
+V MK+ PEK + P P + + K PSP+ L SPA+ V
Sbjct: 353 FKLVETMKSSGHLPEKPQPVIPGLPSKYLPRPPSPKLSKSPSPLQKLRRSPSPAEMV 409
>SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006)
Length = 1382
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 382 VWR-MKAPEKKPLIRPEKPEEVRAKVRRGSQKKQPSPIHALAEFQSPADSV*VQKSIKIN 558
VW+ + AP KPL RP+ P +VR+ G + PSP H L Q Q ++K+
Sbjct: 322 VWQDITAP--KPLPRPKPPTQVRSSF--GIGRPIPSPNHPLPSPQQQQQQQHTQTTMKLK 377
Query: 559 IE 564
E
Sbjct: 378 KE 379
>SB_10566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1264
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +1
Query: 28 KTTMDVINAAKKISEAGTKLDKLTREIAEQCPE-SSTKQDLLAYLQRIALYCHQIQITSK 204
+T DV K++ E TK+D+ RE+ E + TK+++ ++ ++Q T K
Sbjct: 208 ETKKDVQETKKEVHETKTKVDETKREVQETKKDVQETKKEVQETKTKVDETNKEVQETKK 267
Query: 205 VKADVQNISGELIVSGLDSAT 267
+V + G++ +D A+
Sbjct: 268 ---EVHEVKGKVSEMAVDVAS 285
>SB_41786| Best HMM Match : AT_hook (HMM E-Value=0.24)
Length = 324
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 403 EKKPLIRPEKPEEVRAK--VRRGSQKKQPSPIHALAEFQSPADSV 531
E+KP + EKP+E + K + S+KK+P + A + +P S+
Sbjct: 79 ERKPREKKEKPKEKQEKKPKKASSEKKEPEEVTAKDQAPTPQASL 123
>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 28.7 bits (61), Expect = 4.8
Identities = 38/157 (24%), Positives = 61/157 (38%), Gaps = 3/157 (1%)
Frame = +1
Query: 70 EAGTKLDKLTREIAEQCPESSTKQDLLAYLQRIALYCHQIQITSKVKADVQNISGELIVS 249
E G ++ ++ + + E T Q L+ Q L+C+ + + + S + VS
Sbjct: 2184 EVGGRVLRIKSKHVDHLSEFDTCQSLIGLRQWRTLFCNDHESSIQAACRENAGSTDEFVS 2243
Query: 250 GLDSATSLIQAAKNLMNAVVLTVKASYVASTKYTRQGTIASPIVVWRMKAPEKK--PLIR 423
GL+ L A N ++ KA+ S T A I R++ K+ R
Sbjct: 2244 GLEKNPQLRVAFMGDKNVILAPCKAAPAPSAVRTWARKRAERIRKKRIEKENKEHGAEQR 2303
Query: 424 PEK-PEEVRAKVRRGSQKKQPSPIHALAEFQSPADSV 531
EK PE + R + I A +E SP D V
Sbjct: 2304 TEKIPEPKAVGINRILANTEAKDIPAYSE-NSPKDCV 2339
>SB_17138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 490
Score = 28.7 bits (61), Expect = 4.8
Identities = 21/68 (30%), Positives = 30/68 (44%)
Frame = +1
Query: 325 SYVASTKYTRQGTIASPIVVWRMKAPEKKPLIRPEKPEEVRAKVRRGSQKKQPSPIHALA 504
S + K++ G +A +V M+ E K R E P E S KK P + L+
Sbjct: 85 SELPDKKWSLNGDMAKDVVSKVMEKLETKANDRVESPSESTR-----SSKKDPDKVSPLS 139
Query: 505 EFQSPADS 528
+SPA S
Sbjct: 140 RIKSPATS 147
>SB_50283| Best HMM Match : F-box (HMM E-Value=0.00036)
Length = 609
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +1
Query: 55 AKKISEAGTKLDKLTREIAEQCPESSTKQDLLAYLQRIALYCHQIQITSKV-KADVQNIS 231
A ++ +A TKL + + E+C E KQ+++ A + T+K K D N++
Sbjct: 274 AVRLMKASTKLRDIELKDIERCTEGKAKQNIIFAANNEAEHLRNATPTAKARKRDATNVA 333
Query: 232 GEL 240
L
Sbjct: 334 RAL 336
>SB_21719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 424
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Frame = +1
Query: 388 RMKAPE--KKPLIRP-----EKPEEVRAKVRRGSQKKQPSPIHALAE 507
+ ++PE KK L+ P PEE + K + G + K+PS ALAE
Sbjct: 28 KSQSPELLKKNLLAPAPTAASAPEEKKNKKKNGEKNKEPSQKQALAE 74
>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4865
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 500 WRSSRAPPTASRYKNRLK 553
W SSR P +RYKNR K
Sbjct: 154 WNSSRGGPIYARYKNRAK 171
>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
Length = 1806
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 409 KPLIRPEKPEEVRAKVRRGSQKKQPSP 489
KP R +KP++V+AK R +QP P
Sbjct: 922 KPDQRKDKPDQVQAKSRDKPDSEQPQP 948
>SB_3894| Best HMM Match : SOUL (HMM E-Value=1.4e-10)
Length = 205
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2
Query: 387 PNHYRRRDGPLAGVL 343
P HYR+R+GP GVL
Sbjct: 24 PTHYRKREGPRYGVL 38
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,491,412
Number of Sequences: 59808
Number of extensions: 358398
Number of successful extensions: 1122
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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