Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0500
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81579-8|CAN86617.1| 930|Caenorhabditis elegans Hypothetical pr... 181 4e-46
Z81579-7|CAB61019.1| 927|Caenorhabditis elegans Hypothetical pr... 179 2e-45
AF016852-1|AAB94551.1| 927|Caenorhabditis elegans HMP-1 protein. 179 2e-45
AF077541-3|AAM54172.1| 750|Caenorhabditis elegans Alpha-catulin... 74 9e-14
AF077541-2|AAL77190.1| 759|Caenorhabditis elegans Alpha-catulin... 74 9e-14
AF077541-1|AAL77189.1| 803|Caenorhabditis elegans Alpha-catulin... 74 9e-14
Z95619-4|CAB09113.2| 397|Caenorhabditis elegans Hypothetical pr... 31 0.60
Z81523-4|CAB04243.1| 824|Caenorhabditis elegans Hypothetical pr... 31 1.0
AY340594-1|AAQ17186.1| 824|Caenorhabditis elegans SPD-2 protein. 31 1.0
Z22179-5|CAA80162.2| 786|Caenorhabditis elegans Hypothetical pr... 30 1.8
U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n... 29 2.4
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 29 2.4
AF039050-3|AAC47936.2| 498|Caenorhabditis elegans Cytochrome p4... 29 4.2
Z48716-1|CAA88601.1| 482|Caenorhabditis elegans Hypothetical pr... 28 7.4
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr... 28 7.4
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 27 9.8
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 9.8
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 9.8
AF043698-4|AAB97560.1| 275|Caenorhabditis elegans Hypothetical ... 27 9.8
AF043698-3|AAK68268.1| 268|Caenorhabditis elegans Hypothetical ... 27 9.8
>Z81579-8|CAN86617.1| 930|Caenorhabditis elegans Hypothetical protein
R13H4.4b protein.
Length = 930
Score = 181 bits (441), Expect = 4e-46
Identities = 93/166 (56%), Positives = 118/166 (71%)
Frame = +1
Query: 13 GRGPLKTTMDVINAAKKISEAGTKLDKLTREIAEQCPESSTKQDLLAYLQRIALYCHQIQ 192
G GPLKTTMDVI AA++IS G+KL+ L R+I E+ +S TK+DLLAYL +I LYC Q+
Sbjct: 738 GCGPLKTTMDVIRAAQEISLNGSKLNALARQIGEESADSQTKKDLLAYLSQITLYCQQLN 797
Query: 193 ITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKASYVASTKYTRQGTIAS 372
I SKVKADV + EL+VS LDSA SLIQ A+NL+ AVV TVKA+Y+ASTK+ R+ S
Sbjct: 798 ICSKVKADVTQVGNELVVSALDSAMSLIQTARNLLTAVVQTVKAAYIASTKF-RRPNANS 856
Query: 373 PIVVWRMKAPEKKPLIRPEKPEEVRAKVRRGSQKKQPSPIHALAEF 510
V WRM P+K+PLIRP+K + RR S+++ P LAEF
Sbjct: 857 VRVEWRMAPPKKQPLIRPQKNNAIIRVCRRASERRPLQPAKVLAEF 902
>Z81579-7|CAB61019.1| 927|Caenorhabditis elegans Hypothetical protein
R13H4.4a protein.
Length = 927
Score = 179 bits (436), Expect = 2e-45
Identities = 93/166 (56%), Positives = 119/166 (71%)
Frame = +1
Query: 13 GRGPLKTTMDVINAAKKISEAGTKLDKLTREIAEQCPESSTKQDLLAYLQRIALYCHQIQ 192
G GPLKTTMDVI AA++IS G+KL+ L R+I E+ +S TK+DLLAYL +I LYC Q+
Sbjct: 738 GCGPLKTTMDVIRAAQEISLNGSKLNALARQIGEESADSQTKKDLLAYLSQITLYCQQLN 797
Query: 193 ITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKASYVASTKYTRQGTIAS 372
I SKVKADV + EL+VS LDSA SLIQ A+NL+ AVV TVKA+Y+ASTK+ R+ S
Sbjct: 798 ICSKVKADVTQVGNELVVSALDSAMSLIQTARNLLTAVVQTVKAAYIASTKF-RRPNANS 856
Query: 373 PIVVWRMKAPEKKPLIRPEKPEEVRAKVRRGSQKKQPSPIHALAEF 510
V WRM P+K+PLIRP+K + +RR S+++ P LAEF
Sbjct: 857 VRVEWRMAPPKKQPLIRPQKNNAI---IRRASERRPLQPAKVLAEF 899
>AF016852-1|AAB94551.1| 927|Caenorhabditis elegans HMP-1 protein.
Length = 927
Score = 179 bits (436), Expect = 2e-45
Identities = 93/166 (56%), Positives = 119/166 (71%)
Frame = +1
Query: 13 GRGPLKTTMDVINAAKKISEAGTKLDKLTREIAEQCPESSTKQDLLAYLQRIALYCHQIQ 192
G GPLKTTMDVI AA++IS G+KL+ L R+I E+ +S TK+DLLAYL +I LYC Q+
Sbjct: 738 GCGPLKTTMDVIRAAQEISLNGSKLNALARQIGEESADSQTKKDLLAYLSQITLYCQQLN 797
Query: 193 ITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKASYVASTKYTRQGTIAS 372
I SKVKADV + EL+VS LDSA SLIQ A+NL+ AVV TVKA+Y+ASTK+ R+ S
Sbjct: 798 ICSKVKADVTQVGNELVVSALDSAMSLIQTARNLLTAVVQTVKAAYIASTKF-RRPNANS 856
Query: 373 PIVVWRMKAPEKKPLIRPEKPEEVRAKVRRGSQKKQPSPIHALAEF 510
V WRM P+K+PLIRP+K + +RR S+++ P LAEF
Sbjct: 857 VRVEWRMAPPKKQPLIRPQKNNAI---IRRASERRPLQPAKVLAEF 899
>AF077541-3|AAM54172.1| 750|Caenorhabditis elegans Alpha-catulin
(catenin/vinculinrelated) protein 1, isoform d protein.
Length = 750
Score = 74.1 bits (174), Expect = 9e-14
Identities = 43/112 (38%), Positives = 61/112 (54%)
Frame = +1
Query: 13 GRGPLKTTMDVINAAKKISEAGTKLDKLTREIAEQCPESSTKQDLLAYLQRIALYCHQIQ 192
G GPLKTT D+ A+ +E ++ + RE + + P S+ K DL A L+RI L+C Q+Q
Sbjct: 592 GDGPLKTTHDLFTQAEFFAEQANQMYRTVREFSYEVPGSAEKSDLSAILERIPLHCQQLQ 651
Query: 193 ITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKASYVASTKY 348
+ K G+ G S+IQ KNLMN + V AS+V +TKY
Sbjct: 652 VMVK-----SPTVGKTATFG--KVDSVIQETKNLMNEIAKLVTASFVCATKY 696
>AF077541-2|AAL77190.1| 759|Caenorhabditis elegans Alpha-catulin
(catenin/vinculinrelated) protein 1, isoform b protein.
Length = 759
Score = 74.1 bits (174), Expect = 9e-14
Identities = 43/112 (38%), Positives = 61/112 (54%)
Frame = +1
Query: 13 GRGPLKTTMDVINAAKKISEAGTKLDKLTREIAEQCPESSTKQDLLAYLQRIALYCHQIQ 192
G GPLKTT D+ A+ +E ++ + RE + + P S+ K DL A L+RI L+C Q+Q
Sbjct: 592 GDGPLKTTHDLFTQAEFFAEQANQMYRTVREFSYEVPGSAEKSDLSAILERIPLHCQQLQ 651
Query: 193 ITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKASYVASTKY 348
+ K G+ G S+IQ KNLMN + V AS+V +TKY
Sbjct: 652 VMVK-----SPTVGKTATFG--KVDSVIQETKNLMNEIAKLVTASFVCATKY 696
>AF077541-1|AAL77189.1| 803|Caenorhabditis elegans Alpha-catulin
(catenin/vinculinrelated) protein 1, isoform a protein.
Length = 803
Score = 74.1 bits (174), Expect = 9e-14
Identities = 43/112 (38%), Positives = 61/112 (54%)
Frame = +1
Query: 13 GRGPLKTTMDVINAAKKISEAGTKLDKLTREIAEQCPESSTKQDLLAYLQRIALYCHQIQ 192
G GPLKTT D+ A+ +E ++ + RE + + P S+ K DL A L+RI L+C Q+Q
Sbjct: 592 GDGPLKTTHDLFTQAEFFAEQANQMYRTVREFSYEVPGSAEKSDLSAILERIPLHCQQLQ 651
Query: 193 ITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKASYVASTKY 348
+ K G+ G S+IQ KNLMN + V AS+V +TKY
Sbjct: 652 VMVK-----SPTVGKTATFG--KVDSVIQETKNLMNEIAKLVTASFVCATKY 696
>Z95619-4|CAB09113.2| 397|Caenorhabditis elegans Hypothetical
protein H21P03.2 protein.
Length = 397
Score = 31.5 bits (68), Expect = 0.60
Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Frame = +1
Query: 421 RPEKPEEVRAKVRRGSQKKQPSPIHALAEFQSPADSV*VQK-SIKINIENVLK 576
R EK +++R KV RG+++K+P+ AL + A +V ++ SI +++VLK
Sbjct: 244 RVEKQKKIREKVERGAKRKEPA---ALVKVSDKARNVQSEEVSISKELQHVLK 293
>Z81523-4|CAB04243.1| 824|Caenorhabditis elegans Hypothetical
protein F32H2.3 protein.
Length = 824
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +1
Query: 127 SSTKQDLLAYLQRIALYCHQIQITSKVKADVQNISGE--LIVSGLDSATSLIQAAKNLMN 300
S + L + +R+A C + T +V+ +V+NIS L+ + DS T + Q N +
Sbjct: 471 SGVSKPLRIHAKRVAFGCVAVGETLRVEVEVENISDRQCLVRASTDSTTPVYQILDNKLT 530
Query: 301 AV 306
V
Sbjct: 531 MV 532
>AY340594-1|AAQ17186.1| 824|Caenorhabditis elegans SPD-2 protein.
Length = 824
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +1
Query: 127 SSTKQDLLAYLQRIALYCHQIQITSKVKADVQNISGE--LIVSGLDSATSLIQAAKNLMN 300
S + L + +R+A C + T +V+ +V+NIS L+ + DS T + Q N +
Sbjct: 471 SGVSKPLRIHAKRVAFGCVAVGETLRVEVEVENISDRQCLVRASTDSTTPVYQILDNKLT 530
Query: 301 AV 306
V
Sbjct: 531 MV 532
>Z22179-5|CAA80162.2| 786|Caenorhabditis elegans Hypothetical
protein F58A4.5 protein.
Length = 786
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Frame = +1
Query: 367 ASPIVVWRMKAPEKKPLIRPEKPEE--VRAKVRRG-SQKKQPSPIHALAEFQSPADSV*V 537
A P V M+AP KK + + EKPEE + + S KK+ + + + +S D +
Sbjct: 162 AGPAPVHAMRAPAKKRVPKVEKPEEKDIDESLNAALSDKKEKKEVASDKKKESKKDEEDI 221
Query: 538 QKSIKINIENVLKKN 582
+S+ + + KK+
Sbjct: 222 NESMNAALSDERKKS 236
>U80845-1|AAK39181.1| 1217|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 15
protein.
Length = 1217
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 327 VRRLHQVHPPGDHRVSDSG 383
V+R HQ+ PPG HRV G
Sbjct: 415 VQRPHQIQPPGPHRVIQQG 433
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element on
autosome protein2 protein.
Length = 1758
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +2
Query: 104 RSPSSVPNPPLNKTCSPTSN--GSLYTVTRYK 193
R PS+ P PP N TCS GS Y++ R++
Sbjct: 1526 RRPSTTPKPPPNLTCSGCKKILGSDYSLRRHR 1557
>AF039050-3|AAC47936.2| 498|Caenorhabditis elegans Cytochrome p450
family protein 34A6 protein.
Length = 498
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -3
Query: 500 RAWIGLGCFFWLPRRTFALTSSGFSGLMRGFFSGAFMRQ 384
R IG FWL R FALT+ G+ R G M +
Sbjct: 111 RGIIGSNGDFWLEHRRFALTTFRNFGIGRNIIEGKIMEE 149
>Z48716-1|CAA88601.1| 482|Caenorhabditis elegans Hypothetical
protein F59B10.2 protein.
Length = 482
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 388 RMKAPEKK-PLIRPEKPEEVRAKVRRGSQKKQPSPIHALAEFQSPADS 528
R AP + P++ +K E+ K ++ +KK+ +P + F+S +DS
Sbjct: 175 RKPAPARTAPIVVEKKIEKPAVKEQKARKKKEKTPTPTESSFESSSDS 222
>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical
protein F35A5.1 protein.
Length = 1274
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +1
Query: 391 MKAPEKKPLIRPEKPEEVRAKVRRGSQKKQPSPIHALAEFQSP 519
MKA KP + E P V K ++ + PSP A AE SP
Sbjct: 740 MKAVPIKPAPKTEVPPAVVKKPEPVAKSRDPSPKKAKAEPNSP 782
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 55 AKKISEAGTKLDKLTREIAEQCPESSTKQ 141
AK+I E K++K IAE C E TK+
Sbjct: 2211 AKEIQELFVKIEKEINTIAELCKEKMTKK 2239
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 55 AKKISEAGTKLDKLTREIAEQCPESSTKQ 141
AK+I E K++K IAE C E TK+
Sbjct: 2211 AKEIQELFVKIEKEINTIAELCKEKMTKK 2239
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 55 AKKISEAGTKLDKLTREIAEQCPESSTKQ 141
AK+I E K++K IAE C E TK+
Sbjct: 2211 AKEIQELFVKIEKEINTIAELCKEKMTKK 2239
>AF043698-4|AAB97560.1| 275|Caenorhabditis elegans Hypothetical
protein C54G6.1a protein.
Length = 275
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/55 (23%), Positives = 30/55 (54%)
Frame = +1
Query: 25 LKTTMDVINAAKKISEAGTKLDKLTREIAEQCPESSTKQDLLAYLQRIALYCHQI 189
LKT +I+ ++ A ++ ++ REI+E+ + +T Q + +A C+++
Sbjct: 204 LKTATPIIDFDAELLAAPAEIQQILREISEKIDKVTTSQSPGFLAEYLATCCNEV 258
>AF043698-3|AAK68268.1| 268|Caenorhabditis elegans Hypothetical
protein C54G6.1b protein.
Length = 268
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/55 (23%), Positives = 30/55 (54%)
Frame = +1
Query: 25 LKTTMDVINAAKKISEAGTKLDKLTREIAEQCPESSTKQDLLAYLQRIALYCHQI 189
LKT +I+ ++ A ++ ++ REI+E+ + +T Q + +A C+++
Sbjct: 197 LKTATPIIDFDAELLAAPAEIQQILREISEKIDKVTTSQSPGFLAEYLATCCNEV 251
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,316,015
Number of Sequences: 27780
Number of extensions: 243337
Number of successful extensions: 981
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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