Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0499
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0861 - 28348669-28348711,28349471-28349557,28349640-283497... 30 1.7
05_05_0192 - 23128460-23128502,23129130-23129216,23129299-231294... 29 3.9
07_03_1690 - 28716998-28717091,28717203-28717897,28718264-287184... 28 6.9
07_03_1348 + 25945444-25945551,25946411-25946607,25946732-259468... 28 6.9
02_05_0670 - 30764007-30764135,30764404-30764548,30765200-307653... 28 6.9
11_05_0069 - 18814789-18815326,18815742-18816001,18816077-188166... 28 9.1
01_01_0629 - 4738519-4738607,4738700-4738828,4738921-4739011,473... 28 9.1
>03_05_0861 -
28348669-28348711,28349471-28349557,28349640-28349784,
28350832-28350900,28351147-28351207,28351375-28351493,
28351659-28351713
Length = 192
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 472 ENGTDAKRHATSENITETTTCKWTKDRTIHRR 567
EN + RHA S ++ +T C+W+K + R+
Sbjct: 152 ENLSPVSRHALSLHVIDTEGCEWSKQNWLQRK 183
>05_05_0192 -
23128460-23128502,23129130-23129216,23129299-23129443,
23130812-23130872,23131046-23131164,23131320-23131374
Length = 169
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 472 ENGTDAKRHATSENITETTTCKWTKDRTIHRR 567
EN + RHA S ++ +T C+W+K + R+
Sbjct: 129 ENLSLVSRHALSLHVIDTEGCEWSKQNWLQRK 160
>07_03_1690 -
28716998-28717091,28717203-28717897,28718264-28718446,
28718552-28719585,28719805-28719978,28720051-28720168,
28720339-28720521,28720647-28720739,28720981-28721166,
28722247-28722507
Length = 1006
Score = 28.3 bits (60), Expect = 6.9
Identities = 8/35 (22%), Positives = 23/35 (65%)
Frame = +2
Query: 287 NQINEQKPKTEQEVITDNQEYYEIRLVDNADIESK 391
N ++ QKP +++++ N E E+R + ++++++
Sbjct: 843 NMVDSQKPGNDEDLVRPNNESRELRTLHPSEVQNR 877
>07_03_1348 +
25945444-25945551,25946411-25946607,25946732-25946804,
25947003-25947092,25947410-25947465,25947559-25947738,
25947813-25948006,25948095-25948234,25948324-25948466,
25948549-25948697,25948784-25949148,25949264-25949368
Length = 599
Score = 28.3 bits (60), Expect = 6.9
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 5/146 (3%)
Frame = +2
Query: 17 VKPYAHLYNVKDPSRKNILARETTWQEIAKQIS--RPVEECRKRWRGLRDSYTRSKRLGS 190
VK + N DP +L R +A +I+ + + W+ L+ + K
Sbjct: 301 VKHEGNFLNKDDPKIATLLQRADLLCSLATKINTENTSQSMDEAWQQLQHHLDK-KDDND 359
Query: 191 MPGYTKLVVYKKLNFLDDILVDSTEDMEAEESNQINEQKPKTEQEVITDNQEYYEIRL-V 367
M + + L LDD++VD E+ E EE + EQ TEQ + + Q + + V
Sbjct: 360 MSESSMSGMASLLEDLDDLIVDPYEN-EEEEDQDLREQ---TEQIDVENKQNSSQTSMEV 415
Query: 368 DNADIESKFIKILP--KQIENSNKQP 439
+ + ++ P K E++N +P
Sbjct: 416 TSQMVPDNKMEDCPNDKSTEDNNMEP 441
>02_05_0670 -
30764007-30764135,30764404-30764548,30765200-30765309,
30765578-30765761,30765857-30765969,30766242-30766412,
30766493-30766756,30767537-30767782
Length = 453
Score = 28.3 bits (60), Expect = 6.9
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Frame = +2
Query: 2 KLIDLVKPYAHLYNVKDPSRKNILARETTWQEIAKQISRPVEECRKRWRGLRDSYTRSKR 181
K+I++ YA L + S K+ + WQ I RP+E ++ L+ Y
Sbjct: 89 KVINVTPRYARLRADPNGSTKSPIIG---WQNIELISDRPLETMLNEFKQLKKEYPDRIL 145
Query: 182 LGS-MPGYTKLVVYKKLNFLDDILVDSTE 265
+GS M Y K ++ + +++ VD+ E
Sbjct: 146 IGSIMEEYNKAAWHELIERVEESGVDALE 174
>11_05_0069 -
18814789-18815326,18815742-18816001,18816077-18816631,
18816907-18817062
Length = 502
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -3
Query: 313 FWFLFINLITFFCLHVF 263
F+F+FI+ TF CL+VF
Sbjct: 242 FFFMFISSTTFLCLYVF 258
>01_01_0629 -
4738519-4738607,4738700-4738828,4738921-4739011,
4739103-4739177,4739529-4739618,4739742-4739840,
4739934-4739987,4740084-4740131,4740232-4740330,
4740458-4740541,4740650-4740721,4740812-4740907,
4741012-4741077,4741148-4741253,4741350-4741501,
4741634-4741708,4741792-4741912,4742968-4743209,
4743328-4743381
Length = 613
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 95 EIAKQISRPVEECRKR 142
EI+KQ P+EECRK+
Sbjct: 401 EISKQTKAPIEECRKK 416
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,012,409
Number of Sequences: 37544
Number of extensions: 343628
Number of successful extensions: 1044
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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