Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0499
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36653| Best HMM Match : ACBP (HMM E-Value=3.6) 37 0.020
SB_25596| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.035
SB_50703| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.57
SB_16304| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_34799| Best HMM Match : 7tm_1 (HMM E-Value=8.3e-09) 31 1.00
SB_11852| Best HMM Match : fn3 (HMM E-Value=1.2e-24) 30 2.3
SB_8672| Best HMM Match : PKD_channel (HMM E-Value=1.4e-38) 30 2.3
SB_6476| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_45533| Best HMM Match : SAP (HMM E-Value=0.55) 29 3.0
SB_18986| Best HMM Match : RecR (HMM E-Value=2.1) 29 4.0
SB_13431| Best HMM Match : Seryl_tRNA_N (HMM E-Value=2.3) 29 4.0
SB_15464| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_51632| Best HMM Match : RasGAP (HMM E-Value=1.3) 28 7.0
SB_39336| Best HMM Match : Kinesin (HMM E-Value=0) 28 7.0
SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8) 28 7.0
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0) 28 9.3
SB_20216| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 9.3
SB_10098| Best HMM Match : NADH5_C (HMM E-Value=0.94) 28 9.3
SB_51094| Best HMM Match : VWA (HMM E-Value=0) 28 9.3
SB_22354| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 9.3
SB_7994| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_36653| Best HMM Match : ACBP (HMM E-Value=3.6)
Length = 206
Score = 36.7 bits (81), Expect = 0.020
Identities = 18/60 (30%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Frame = +2
Query: 5 LIDLVKPYAHLYN--VKDPSRKNILARETTWQEIAKQISRPVEECRKRWRGLRDSYTRSK 178
L + V+ + LY+ +KD KN +E W+++A+Q V+E ++++ LR+ Y++ K
Sbjct: 21 LAEAVRAFPVLYDKSIKDFKDKN--KKENAWKQVAEQAGCSVDEAKRKFLNLRNRYSKDK 78
>SB_25596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 89
Score = 35.9 bits (79), Expect = 0.035
Identities = 17/60 (28%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Frame = +2
Query: 5 LIDLVKPYAHLYN--VKDPSRKNILARETTWQEIAKQISRPVEECRKRWRGLRDSYTRSK 178
+ + V+ + LY+ +KD KN +E W+++A+Q V+E ++++ LR+ Y++ K
Sbjct: 21 IAEAVRAFPVLYDKSIKDFKDKN--KKENAWKQVAEQAGCSVDEAKRKFLNLRNRYSKDK 78
>SB_50703| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 31.9 bits (69), Expect = 0.57
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +2
Query: 254 DSTEDMEAEESNQINEQKPKTEQEVITDNQEYYEIRLVDNADIESKFIKILPK 412
+ E+ E +E Q E K + E+++ +NQ++ I + D+ SK + +PK
Sbjct: 76 EEEEEEEEKEDKQEEEDKQEEEEDIRAENQDHELIVPLLFHDLTSKMVPFVPK 128
>SB_16304| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1489
Score = 31.5 bits (68), Expect = 0.76
Identities = 20/92 (21%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Frame = +2
Query: 32 HLYNVKDPSRKNILARETTWQEIAKQISRPVEECRKRWRGL-RDSYTRSKRLGSMPGYTK 208
H+Y+ DP+ K A + + +A Q+ + E+ R+++R L + R++ M +
Sbjct: 1245 HVYHEPDPTPKESAAADALYNAVATQLIKRSEKMREKYRQLILEESMRTEPSSEMVMLYR 1304
Query: 209 LVVYKKLNFLDDILVDSTEDMEAEESNQINEQ 304
+ + + L + + ED++A E+ I+ +
Sbjct: 1305 VYLSDERASLAKDRLQAAEDLKALEAAAISRE 1336
>SB_34799| Best HMM Match : 7tm_1 (HMM E-Value=8.3e-09)
Length = 225
Score = 31.1 bits (67), Expect = 1.00
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -2
Query: 206 WCNLAYYRDVYF--LYNYHGDLSISSCILQLVWISVSLFLAMLFPL 75
WC Y R +YF + N+ L +S+ +L L I+ + A++ PL
Sbjct: 90 WCLETYIRSIYFCKVVNFGQCLLVSTSVLTLACIAADRYFAIVRPL 135
>SB_11852| Best HMM Match : fn3 (HMM E-Value=1.2e-24)
Length = 691
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = -1
Query: 723 SI*LRYKFGGNFLTLDAMLXKNTSISLVFSLRILSMSLSMVCVLDATGI 577
SI + F LTL M+ N SIS + SLR+L +S+S + L I
Sbjct: 445 SIKFKKSFSDELLTLQEMMEVNQSISNI-SLRLLQLSISQMSDLTPPSI 492
>SB_8672| Best HMM Match : PKD_channel (HMM E-Value=1.4e-38)
Length = 1523
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/78 (26%), Positives = 40/78 (51%)
Frame = +2
Query: 200 YTKLVVYKKLNFLDDILVDSTEDMEAEESNQINEQKPKTEQEVITDNQEYYEIRLVDNAD 379
Y L+ + +NF IL DS ED++A S N ++ + + ++ ++ IR + D
Sbjct: 1172 YKLLMSFIFVNFFVAILNDSYEDVKA--STDKNSKEFEMAEFILDRLKQLLSIRKREEDD 1229
Query: 380 IESKFIKILPKQIENSNK 433
ES+ ++ L K+ E +
Sbjct: 1230 SESERLRKLQKEAEKETR 1247
>SB_6476| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 293
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = +2
Query: 2 KLIDLVKPYAHLYNVKDPSRKNILARETTWQEIAKQISRPVEECRKRWRGLRDSYTRS-K 178
+LIDL + L++V + R+ +EIA+Q+ + + + + + LR R
Sbjct: 39 QLIDLFEERPCLWDVSNKEYYQKGNRQRAEEEIAEQMGITLNDVKSKIKSLRSQLGREIY 98
Query: 179 RLGSMPGYTKL-VVYKKLNFLDDIL 250
++ + Y + + + KL FL D++
Sbjct: 99 KIRTSENYVPIWIFWHKLQFLADVM 123
>SB_45533| Best HMM Match : SAP (HMM E-Value=0.55)
Length = 371
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 236 LDDILVDSTEDMEAEESNQINEQKPKTEQEVITDNQEYYEIRLVDN 373
+DD+ +S ED+ EE N+I++ P T T+ + I +N
Sbjct: 173 MDDLEDESEEDISDEEYNRIHQDMPGTSTSTSTEETQTSAIISTEN 218
>SB_18986| Best HMM Match : RecR (HMM E-Value=2.1)
Length = 190
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 197 GYTKLVVYKKLNFLDDILVDSTEDMEAEESNQINEQKPKTEQEVITDNQEYYE 355
G K ++ K+ N S+ED E E+++ K T QE I DN + ++
Sbjct: 136 GKKKRIIQKR-NLKTSKTDTSSEDKENSENDKNTSGKEDTSQEAIVDNDDVFK 187
>SB_13431| Best HMM Match : Seryl_tRNA_N (HMM E-Value=2.3)
Length = 743
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/63 (30%), Positives = 33/63 (52%)
Frame = +2
Query: 158 DSYTRSKRLGSMPGYTKLVVYKKLNFLDDILVDSTEDMEAEESNQINEQKPKTEQEVITD 337
D + + L S G TK V + K+NFL++ S D+ ++E IN + E++ +D
Sbjct: 432 DDKSGDEELISKQGKTKKV-FDKMNFLEEEAELSGSDVGSDEDEDINTDDDELEED--SD 488
Query: 338 NQE 346
+E
Sbjct: 489 QEE 491
>SB_15464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1042
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Frame = -2
Query: 554 VRSLVHLQVVVSVIFSLVA--------CLLASVPFSYDHCSFFLFSWVVCYCFLFVWVIF 399
VR L+H V V +LVA CL+ VPF + + F W+ + LF+++++
Sbjct: 605 VRKLLHQAVKKHVTDALVAMTSYRRDKCLMHHVPFKLMNLKWQTFGWLSLWLNLFIYLMY 664
>SB_51632| Best HMM Match : RasGAP (HMM E-Value=1.3)
Length = 110
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 512 FSLVACLLASVPFSYDHCSFFLFSWVVCY 426
+ VAC VPFSY + F + VVCY
Sbjct: 35 YERVACYYVRVPFSYSRVTCF-YERVVCY 62
>SB_39336| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 558
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/99 (19%), Positives = 45/99 (45%)
Frame = +2
Query: 89 WQEIAKQISRPVEECRKRWRGLRDSYTRSKRLGSMPGYTKLVVYKKLNFLDDILVDSTED 268
+ ++ ++ + ++ RK + D+ T ++ P ++ + + + L +D
Sbjct: 354 YMKLCQEYQKEIKNLRKEL-AMHDTLTNRSQISYEP-LSESQIEDVKDQVKRFLSGDLDD 411
Query: 269 MEAEESNQINEQKPKTEQEVITDNQEYYEIRLVDNADIE 385
+E QI E + + V + +E EI+L+D D+E
Sbjct: 412 IELVNMRQIKETFAQFRKIVNSMEEEVEEIKLIDTVDLE 450
>SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8)
Length = 347
Score = 28.3 bits (60), Expect = 7.0
Identities = 28/126 (22%), Positives = 49/126 (38%)
Frame = -2
Query: 566 LLCIVRSLVHLQVVVSVIFSLVACLLASVPFSYDHCSFFLFSWVVCYCFLFVWVIF**TC 387
L+ IV + + + +F L+ + A + Y +CS F+F +V C + C
Sbjct: 170 LITIVHARLFMIYAYCSLFVLITIVHARLFMIYAYCSLFVFITIVHACLFMINAY----C 225
Query: 386 SQYLHCQLV*SHNTLDYXXXXXXXXXXXVH*SDYFLLPPCLRCYQPRCHQGNSVFCRQLI 207
S ++ +V + + Y VH S Y L C+ C + + R L
Sbjct: 226 SLFVLITIVHACLFMIYAYCSLFVFITIVHASVYDLRVLFFVCFNYNCSRASVYDLRVLF 285
Query: 206 WCNLAY 189
+ L Y
Sbjct: 286 FVCLNY 291
>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
Length = 1291
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +2
Query: 188 SMPGYTKLVVYKKLNFLDDILVDSTEDMEAEESNQINEQKPKTEQEVITDNQEY 349
S+PG+T++ K + ++VDS D A + ++E++ +EV+ Y
Sbjct: 404 SLPGFTRVFFVKNFSKAPRVIVDS-GDSGASTQSSVSEEESLNVREVLLTGLGY 456
>SB_20216| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 372
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = -2
Query: 197 LAYYRDVYFLYNYHGDLSISSCILQLVWISVSLFLAMLFPL 75
LA + VYFL + G +SI L LV ++V F+ ++FPL
Sbjct: 109 LALCKIVYFLADISGPVSI----LSLVCMAVDRFVGVVFPL 145
>SB_10098| Best HMM Match : NADH5_C (HMM E-Value=0.94)
Length = 310
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/53 (22%), Positives = 26/53 (49%)
Frame = -2
Query: 566 LLCIVRSLVHLQVVVSVIFSLVACLLASVPFSYDHCSFFLFSWVVCYCFLFVW 408
L+ I+ + + + +F L+ + A + Y +CS F+F +V C ++
Sbjct: 210 LITIIHACLFMIYAFCSLFVLITIVHARLFMIYAYCSLFVFITIVHACLFMIY 262
>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
Length = 3544
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 608 DKLIERILKENTNEIDVFFXSMASS 682
D ++ RILK+ T E+D+ F SS
Sbjct: 960 DHIVRRILKDGTEEMDIVFAMTLSS 984
>SB_22354| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 372
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = -2
Query: 197 LAYYRDVYFLYNYHGDLSISSCILQLVWISVSLFLAMLFPL 75
LA + VYFL + G +SI L LV ++V F+ ++FPL
Sbjct: 109 LALCKIVYFLADISGPVSI----LSLVCMAVDRFVGVVFPL 145
>SB_7994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 907
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 41 NVKDPSRKNILARETTWQEIAKQISRPVEECRKRWRGLRD 160
+VKD RK A +E K+ + E+ R+R RGL D
Sbjct: 473 SVKDKLRKAEEAERKAKEEEEKRKKKEAEQARRRARGLED 512
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,330,379
Number of Sequences: 59808
Number of extensions: 418069
Number of successful extensions: 1493
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1489
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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