Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0498
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18420.1 68414.m02300 expressed protein contains Pfam profile...    30   1.9  
At4g30710.2 68417.m04353 expressed protein contains Pfam domain,...    29   3.3  
At4g30710.1 68417.m04352 expressed protein contains Pfam domain,...    29   3.3  
At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein ...    29   4.4  
At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein ...    29   4.4  
At4g38890.1 68417.m05508 dihydrouridine synthase family protein ...    28   5.8  
At1g24706.1 68414.m03104 expressed protein                             28   5.8  
At4g36910.1 68417.m05232 CBS domain-containing protein contains ...    28   7.6  

>At1g18420.1 68414.m02300 expressed protein contains Pfam profile
           PF01027: Uncharacterized protein family UPF0005
          Length = 581

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +3

Query: 303 HNGFKKTDKHPPKNWGDVDTLGNLDPA 383
           H    +    PPKNW DV T  NL  A
Sbjct: 470 HKSQSEATLRPPKNWDDVTTAANLSSA 496


>At4g30710.2 68417.m04353 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
 Frame = +1

Query: 25  EKPQQWSTPQPSRNWRLVSASSRDPTLSRC*RSTLPGKYSTA*RTRRPHSDPPSLTVSNR 204
           E   ++ +P P++N R  S S   PT+S   +S +  K + +   +RP S PPS T  + 
Sbjct: 31  EVSSRYRSPTPTKNGRCPSPSVTRPTVSSSSQS-VAAKRAVSAERKRP-STPPSPTSPST 88

Query: 205 VSRTWT---PASVSTRRTPSRTP 264
             R  +   PAS S R +  R P
Sbjct: 89  PIRDLSIDLPAS-SRRLSTGRLP 110


>At4g30710.1 68417.m04352 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
 Frame = +1

Query: 25  EKPQQWSTPQPSRNWRLVSASSRDPTLSRC*RSTLPGKYSTA*RTRRPHSDPPSLTVSNR 204
           E   ++ +P P++N R  S S   PT+S   +S +  K + +   +RP S PPS T  + 
Sbjct: 31  EVSSRYRSPTPTKNGRCPSPSVTRPTVSSSSQS-VAAKRAVSAERKRP-STPPSPTSPST 88

Query: 205 VSRTWT---PASVSTRRTPSRTP 264
             R  +   PAS S R +  R P
Sbjct: 89  PIRDLSIDLPAS-SRRLSTGRLP 110


>At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein
           contains Pfam profile: PF01529: DHHC zinc finger domain
          Length = 596

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 6   DGCSSARKAATMVDAATLEKLEAGFS-KLQGSDSKSLLK 119
           DGC SA   A   D   +E  E G + KL+ S+  SLL+
Sbjct: 96  DGCGSATGGAKSHDGTCVEDTENGSNKKLESSERSSLLR 134


>At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein
           contains Pfam profile: PF01529: DHHC zinc finger domain
          Length = 596

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 6   DGCSSARKAATMVDAATLEKLEAGFS-KLQGSDSKSLLK 119
           DGC SA   A   D   +E  E G + KL+ S+  SLL+
Sbjct: 96  DGCGSATGGAKSHDGTCVEDTENGSNKKLESSERSSLLR 134


>At4g38890.1 68417.m05508 dihydrouridine synthase family protein
           contains Pfam domain, PF01207: Dihydrouridine synthase
           (Dus)
          Length = 700

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 333 PPKNWG--DVDTLGNLDPAGEFVVSTRVRCGRSLEGYPFNPCLTESQYKEMED 485
           PP  +G  D++TL   + AG++V  + +  G+  EG+ F P    + Y   E+
Sbjct: 647 PPSYFGRDDLETLMMSESAGDWVRISEMLLGKVPEGFTFAPKHKSNAYDRAEN 699


>At1g24706.1 68414.m03104 expressed protein
          Length = 1781

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -3

Query: 523  SSPSRLDRVPETLSSISLYWDSVRQGLKGYPSSERPQRTRVETTNSPAG 377
            S  +RLD         S + D  R   KGY   +R  R RV+ ++ P G
Sbjct: 1461 SVEARLDLNKTVTDDQSTHRDQDRSKDKGYERQDRDHRERVDRSDKPRG 1509


>At4g36910.1 68417.m05232 CBS domain-containing protein contains
           Pfam profile PF00571: CBS domain
          Length = 236

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = -3

Query: 535 NVPLS-SPSRLDRVPETLSSISLYWDSVRQGLKGYPSSERPQRTRVETTNSPAGSRLPSV 359
           +VPLS +P R    P +   +   + SV+   K   S   P ++R+ + +S AGS L + 
Sbjct: 7   SVPLSFTPLRASSSPSSPYLLLPRFLSVQPCHKFTFSRSFPSKSRIPSASSAAGSTLMTN 66

Query: 358 STSPQ 344
           S+SP+
Sbjct: 67  SSSPR 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,953,735
Number of Sequences: 28952
Number of extensions: 311827
Number of successful extensions: 1243
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)