Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0496
(452 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17465| Best HMM Match : Dpy-30 (HMM E-Value=0.05) 29 1.4
SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31) 28 3.1
SB_55456| Best HMM Match : Cadherin (HMM E-Value=0) 28 3.1
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021) 27 5.5
SB_49009| Best HMM Match : Ribosomal_S26e (HMM E-Value=7.3) 27 5.5
SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09) 27 9.6
SB_29818| Best HMM Match : zf-AD (HMM E-Value=1.3) 27 9.6
SB_46818| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_17465| Best HMM Match : Dpy-30 (HMM E-Value=0.05)
Length = 249
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +1
Query: 163 IAGFATHLMRRLRHSQVRGISIKLQE--EERERRDNYVPEVSALEHDIIEVDPDTKDML 333
I + ++MR+ R + R ++ +LQE E++R+D E++ L I +D KD L
Sbjct: 44 IRNLSRNIMRKWREAHERKVNKRLQELRIEKKRKDGEAKEIARLVTRKIPLDVLAKDWL 102
>SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31)
Length = 996
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -3
Query: 357 NIVEVQHLQHILGVGVYFDDVMFESRHF--WDIVVTP 253
N+ ++ +H++ G D M E++HF W++V P
Sbjct: 361 NLGSSRNYKHLMDAGGILSDKMHENKHFHSWNVVYVP 397
>SB_55456| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 736
Score = 28.3 bits (60), Expect = 3.1
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = +1
Query: 217 GISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNN-----INGLQLTQP 381
G+ +E +RE Y VSA +H + D + + +LD N+ +GL +T
Sbjct: 456 GLVTTARELDRETIATYTLTVSAYDHGVSSRHKDVQLTVNVLDENDNTPQITDGLTITTN 515
Query: 382 ATQGGYGG 405
++G GG
Sbjct: 516 ISEGAGGG 523
>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
Length = 1217
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +1
Query: 121 EEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDI 300
+ + +P++ LRN++ + L R + Q I K +EE+ + NY+ + EH +
Sbjct: 456 KNLQAMPSEGLRNQLTLMSVALQRSIFTIQHDHIKAKKREEQEQMAQNYL-RTARKEHKL 514
Query: 301 I 303
+
Sbjct: 515 M 515
>SB_49009| Best HMM Match : Ribosomal_S26e (HMM E-Value=7.3)
Length = 163
Score = 27.5 bits (58), Expect = 5.5
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Frame = +1
Query: 145 KPLRNKIAGFATHLMRRLRHSQVRGIS-IKLQEEERERRDNYVPEVS-ALEHDII-EVDP 315
K LR ++ FA+H RRLR + +R K+ + ++ Y P VS A+ II ++D
Sbjct: 56 KALRGRVGLFASHCERRLRRTALRSRGWTKILKNHTLFQELY-PRVSRAISGTIIFDLDH 114
Query: 316 DTKDMLKMLD----FNNINGLQLTQPATQ 390
+ + + D ++N + +P+T+
Sbjct: 115 KRRSTISLQDNTFPRQSLNAKSIAEPSTR 143
>SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1040
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 73 YYTRLTLDFDTNKRICEEIAIIPTKPLRNK 162
YY++LT D+D+ K EI I+P+ P+ K
Sbjct: 14 YYSKLTHDYDSGKLQSPEI-ILPSVPVVTK 42
>SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1087
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +1
Query: 184 LMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKD 327
L +R RHS+ S + RE+ +++ ++ LE++ D DT++
Sbjct: 54 LEKRYRHSRKGTESHNTGTDTREKVLSHITQIQTLENESHNTDTDTRE 101
>SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1220
Score = 26.6 bits (56), Expect = 9.6
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = -3
Query: 408 PATIATLGSWLC*LQAINIVEVQHL----QHILGVGVYFDDVMFESRHFWDIVVTPLTLL 241
P T+ T + + +QAI++ ++QH+ Q + V + D +S + + VT L
Sbjct: 1034 PVTVVTDDASVAAIQAIDVTDIQHISGGTQITIPVAIATDTGTIQSHTYDESAVTAFGRL 1093
Query: 240 FLKFDRD 220
F+ D
Sbjct: 1094 ITAFNWD 1100
>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
Length = 1084
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 271 PEVSALEHDIIEVDPDTKDMLKMLDFNNINGL 366
PE+S + H I PD +D +L+F+NI G+
Sbjct: 112 PEISKMLHHIY---PDLEDHESVLNFDNIKGV 140
>SB_29818| Best HMM Match : zf-AD (HMM E-Value=1.3)
Length = 275
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 209 KCEESLSNFRKRSVRGVTTMSQKCLL 286
KC SL F+K ++G T +S+K L+
Sbjct: 112 KCILSLGRFKKAKIKGQTFVSKKALV 137
>SB_46818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 95 ILIQIKEYVKKSLSFLPSLLGIKLLDL 175
+L I+E K L+ LPSL+ +K LDL
Sbjct: 219 LLAWIQEKRKNGLAILPSLIRMKALDL 245
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,067,167
Number of Sequences: 59808
Number of extensions: 214027
Number of successful extensions: 533
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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