Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0495
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1258 + 25244863-25245282,25246419-25246568,25246665-252468...    32   0.56 
04_04_0420 + 25094018-25094202,25094909-25095203                       31   0.74 

>07_03_1258 +
           25244863-25245282,25246419-25246568,25246665-25246877,
           25246979-25247068,25247311-25247424,25247881-25248150,
           25248251-25248407,25248691-25248741,25248742-25248819,
           25249357-25249457,25249832-25250002,25250136-25250210,
           25251527-25251793
          Length = 718

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +3

Query: 402 RKYVXFVLXTXRSMYGRXIEQLKQAXXTILSE 497
           RK V FV+ T  SM G  +E +K A  T LSE
Sbjct: 332 RKAVVFVIDTSGSMQGHPLENVKNAMSTALSE 363


>04_04_0420 + 25094018-25094202,25094909-25095203
          Length = 159

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 48  HCHH*HSGSRTKSPN*GCRXSSTGNEIDATK 140
           HCHH  S +R+++PN G +    G E+   K
Sbjct: 20  HCHHHRSSARSRNPNFGRKGRVEGEELTGEK 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,177,942
Number of Sequences: 37544
Number of extensions: 231794
Number of successful extensions: 352
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)