Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0495
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41658| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.14 
SB_27222| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_16418| Best HMM Match : CXCXC (HMM E-Value=0.029)                   28   7.0  

>SB_41658| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 448

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +2

Query: 569 CRSRNHPKRXC-SYYDRPDVKPPLRPGXXSXSRXISXXXTXIVDRLXXKRRXP 724
           C+S + P+R C SY D PD+ P   PG     R +S   + +       +R P
Sbjct: 108 CQSADGPQRKCASYLDLPDLAPSPPPGKLRDQRHVSSSESLVSGAAFSTQRPP 160


>SB_27222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -1

Query: 339 RRLLVVQHXTEPRIVQEHPXHYPEGSL--WIFXHRLTSIF 226
           RR   +     P I+QE   HYP   L  W+F  R+  +F
Sbjct: 61  RRKRTLNGENRPEIIQETCSHYPTSCLPKWLFVVRMRKVF 100


>SB_16418| Best HMM Match : CXCXC (HMM E-Value=0.029)
          Length = 171

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 473 GXADXPXRD*TPEXTSAFYPSITDVLGD*HTICRSRNHPKRXCS 604
           G  D    D  P  +S+FY  + DV+ +  T+    NH K  CS
Sbjct: 81  GSCDQTYYDCQPVQSSSFYIPVDDVITNQVTMVSVTNHTKCACS 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,509,977
Number of Sequences: 59808
Number of extensions: 273862
Number of successful extensions: 518
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)