Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0491
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po...    27   3.8  
SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...    26   6.6  
SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyce...    26   6.6  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    25   8.7  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   8.7  

>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 363 STTLNSCVHLGCLQGFFKYRY 425
           ST L S  H GCL  F +Y Y
Sbjct: 53  STLLASYEHFGCLDDFLRYYY 73


>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 287 IYIASFIRTSGEDFTENGPSLPLIVLGILMAKSLIHR*N 171
           +YI S +RT    F  +  SLP   LG +  K  + R N
Sbjct: 6   VYIVSAVRTPMGSFGGSFASLPATKLGSIAIKGALERVN 44


>SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 295

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -1

Query: 483 ESTINTNFSEKLRRKIFSNYIYT*KNPVDIQDER 382
           +S I+ NF E++R  ++  +    +   D+QD+R
Sbjct: 183 DSAISKNFCEQVRAVLYPRFAEAHRVKADVQDKR 216


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +3

Query: 9   PSAGILTLTAHVAPNFE*LNRSSVPFLNRENVGM---WIILSVSYDIQLK 149
           PS  I      + P+ E   RSS PFLN  +  +    + L+   D QLK
Sbjct: 574 PSETISEDIEEILPSLESSERSSTPFLNTNSASLKSEVVQLTTFSDFQLK 623


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 160 QNQSFNCMS*DTDNIIHIPTFSRFKNG 80
           + + +  +S   D I+HI  FS+F NG
Sbjct: 169 EKKGYQNLSSALDTILHIKKFSKFPNG 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,811,610
Number of Sequences: 5004
Number of extensions: 55059
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)