Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0491
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0922 - 22612773-22613321,22613616-22614189,22614389-226144...    30   2.3  

>07_03_0922 -
           22612773-22613321,22613616-22614189,22614389-22614466,
           22615455-22615504,22616215-22616448
          Length = 494

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/75 (25%), Positives = 34/75 (45%)
 Frame = -1

Query: 249 LHRKRAKLTSDCARHFDGKILDSQIKRLKTKTNPLIVCRRTQTILSTFQHFHDSKMEHCF 70
           + RKR +      RH D +IL S+IK   T +   ++      + +    +  + +EH  
Sbjct: 311 VQRKRTRYKKMIRRHIDFRILHSKIKSGATSSTKELLRDILLFVNNVLAFYPKATLEHMA 370

Query: 69  DSTIRNLAPRELSMS 25
              +RN+A R +  S
Sbjct: 371 AIELRNIAFRTVQES 385


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,591,685
Number of Sequences: 37544
Number of extensions: 308237
Number of successful extensions: 561
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)