Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0491
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81048-1|CAB02839.1|  587|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AB033380-1|BAA92264.1|  587|Caenorhabditis elegans kinesin like ...    30   1.5  
Z92812-9|CAM84813.1|  338|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF067942-6|AAG45579.1|  345|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z81464-3|CAB03858.1|  151|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z49913-1|CAA90142.1|  340|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>Z81048-1|CAB02839.1|  587|Caenorhabditis elegans Hypothetical
           protein C41G7.2 protein.
          Length = 587

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = -1

Query: 252 RLHRKRAKLTSDCARHFDGKI--LDSQIKRLKTKTNPLIVCRRTQTILSTFQHFHDSKME 79
           +L R+ A+ T D A H   KI  LD +++    K   L      Q  LST +  H SKME
Sbjct: 160 QLEREMAEAT-DFAEHQKSKIQFLDGKLEGADRKLISL------QDQLSTLKEVHKSKME 212

Query: 78  HCFDSTIRNLAPREL 34
            C +  + N   R+L
Sbjct: 213 ECEEYRVHNNDLRDL 227


>AB033380-1|BAA92264.1|  587|Caenorhabditis elegans kinesin like
           protein protein.
          Length = 587

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = -1

Query: 252 RLHRKRAKLTSDCARHFDGKI--LDSQIKRLKTKTNPLIVCRRTQTILSTFQHFHDSKME 79
           +L R+ A+ T D A H   KI  LD +++    K   L      Q  LST +  H SKME
Sbjct: 160 QLEREMAEAT-DFAEHQKSKIQFLDGKLEGADRKLISL------QDQLSTLKEVHKSKME 212

Query: 78  HCFDSTIRNLAPREL 34
            C +  + N   R+L
Sbjct: 213 ECEEYRVHNNDLRDL 227


>Z92812-9|CAM84813.1|  338|Caenorhabditis elegans Hypothetical
           protein T03E6.9 protein.
          Length = 338

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 428 LEKIFLRNFSEKFVFIVLSQISSVPILEP 514
           ++K+FLR     ++F++L  +   PILEP
Sbjct: 52  VKKLFLRQIVINYIFLILISVIVCPILEP 80


>AF067942-6|AAG45579.1|  345|Caenorhabditis elegans Hypothetical
           protein ZK6.4 protein.
          Length = 345

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 138 CRRTQTILSTFQHFHDSKMEHCFDSTIRNL 49
           C +    L ++ HF +   E C DSTI+NL
Sbjct: 69  CIQVGMTLPSYLHFGEQTKEKCLDSTIQNL 98


>Z81464-3|CAB03858.1|  151|Caenorhabditis elegans Hypothetical
           protein C08E8.4 protein.
          Length = 151

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
 Frame = -1

Query: 261 FW*RLHRKRAKLTSDCARHFDGKILDSQIKRLKTKTNPLIVCRRTQTIL------STFQH 100
           FW + H K  K   D A+++  +IL +  + + T+   ++  +  QT +      S F +
Sbjct: 18  FWLKFHEKSEKEEFDFAKNYRDQILKNHFRVMHTR---ILNAKNQQTYVLFYEDESVFSN 74

Query: 99  FHDSKME 79
           FH S  E
Sbjct: 75  FHPSNFE 81


>Z49913-1|CAA90142.1|  340|Caenorhabditis elegans Hypothetical
           protein ZK938.2 protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 140 TIKGLVLVFNRFICESRILPSKCRAQSEVSL 232
           T+KG V++ N+   ++R +  KCR +SE  L
Sbjct: 24  TVKGTVVLTNKTPLDARCVTIKCRGKSETYL 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,159,883
Number of Sequences: 27780
Number of extensions: 300161
Number of successful extensions: 632
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)