Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0491
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g28940.1 68418.m03581 hypothetical protein                          28   7.6  
At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR...    28   7.6  

>At5g28940.1 68418.m03581 hypothetical protein
          Length = 485

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/63 (22%), Positives = 31/63 (49%)
 Frame = -1

Query: 198 GKILDSQIKRLKTKTNPLIVCRRTQTILSTFQHFHDSKMEHCFDSTIRNLAPRELSMSEF 19
           GK  D  I+  +  T  ++VC      ++TF+   ++++ + FD+++  + P    +  F
Sbjct: 138 GKFADQVIQECENSTGEIVVCLIRFAKINTFR--GENQITNAFDASVVTINPEFPEVEHF 195

Query: 18  PRS 10
             S
Sbjct: 196 KNS 198


>At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1226

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 168  LKTKTNPLIVCRRTQTILSTFQHFHDSKMEHCFDSTIRNLAPRELSM 28
            LKT +NPL      Q I STF   + +K+E      I + A R+  +
Sbjct: 868  LKTVSNPLACLTTAQQIYSTFILTNCNKLERSAKEEISSFAQRKCQL 914


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,007,308
Number of Sequences: 28952
Number of extensions: 269565
Number of successful extensions: 524
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)