Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0490
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    26   7.2  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    25   9.5  

>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 19/60 (31%), Positives = 33/60 (55%)
 Frame = +3

Query: 486 ISIGHAYSPTIHCQGLVI*HFNRQKCGYRIIGRSNQYKLMSNSSAFIRNR*FFRSLKNIG 665
           I  G+A++  +HC    + +  R + GY ++G SN+Y       +++R   F+ SLK IG
Sbjct: 447 IQFGNAFN-LMHCG---VSYVRRHQSGYGVVGVSNKY----GQRSWVRYPVFW-SLKKIG 497


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 238 IGSESRSTVTIRRATQWAVYWLVLYI*SWVAASHSN 131
           I ++  ST  + +   +AVYWL+L I  + A + SN
Sbjct: 822 IFTDLSSTDFLHKVNVFAVYWLILAIVQFFAYAISN 857


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,251,385
Number of Sequences: 5004
Number of extensions: 67239
Number of successful extensions: 125
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)