Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0490
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0437 + 21234261-21234592,21234929-21234997,21235506-212356...    29   3.3  
08_02_0981 + 23266174-23266689,23268389-23268549,23269068-232693...    29   5.7  
07_01_1218 - 11633829-11634628,11634713-11635050,11635349-116354...    29   5.7  

>05_04_0437 +
           21234261-21234592,21234929-21234997,21235506-21235629,
           21235740-21235745
          Length = 176

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 205 RRATQWAVYWLVLYI*SWVAASHSNMHGVWFRLSS 101
           R A   A YWL+L +  W+A +   MH +   L S
Sbjct: 6   REAAHLARYWLILGLWGWIACAGLRMHNLCCGLGS 40


>08_02_0981 +
           23266174-23266689,23268389-23268549,23269068-23269309,
           23270180-23270284,23270746-23270902,23271860-23272028,
           23272598-23272638,23273151-23273216,23273524-23273779
          Length = 570

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 613 LLHLFEIDDFFGLLKTLETICVNENIFDES 702
           +LH+ E+DD   + KT++ I  N+  F++S
Sbjct: 363 ILHIKELDDVPSIAKTMKHIASNQEAFNQS 392


>07_01_1218 -
           11633829-11634628,11634713-11635050,11635349-11635445,
           11635482-11635725,11636114-11636122
          Length = 495

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -1

Query: 674 QIVSNVFKRPKKSSISNK-CRRV*HKFVLI*T--TNDPIPAFLSIKMSND 534
           Q+   +FKR ++S  SN  C+ +    V      T+ PIP + SIK  ND
Sbjct: 406 QVYETMFKRLEESPKSNSTCKSLDEDMVQCSQIKTSSPIPPYYSIKQDND 455


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,828,934
Number of Sequences: 37544
Number of extensions: 444128
Number of successful extensions: 845
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)