Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0490
         (800 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35767| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.038
SB_45177| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_36688| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_16870| Best HMM Match : Methyltransf_3 (HMM E-Value=1)              29   5.8  
SB_54654| Best HMM Match : rve (HMM E-Value=0.0035)                    28   7.7  

>SB_35767| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 35.9 bits (79), Expect = 0.038
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +1

Query: 19  FLNFVIVTYFGEQNKSRFLYMFTKSFACC 105
           F NFVI   F E+ +S F Y F+K F CC
Sbjct: 76  FANFVIFCVFTEKMRSHFKYWFSKIFPCC 104


>SB_45177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 863

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +1

Query: 514 QYTVRDLSFDILIDKNAGIGSLVVQINTNLCQTLLHLFEI-DDFFGLLKTLETICVN 681
           Q TV DL    L   +AG   L  ++   LC TL+H  ++ DD   L++T+E +  N
Sbjct: 704 QKTVEDLG-RFLQPSDAGQKQLF-ELTDKLCNTLIHRVKLSDDLKPLIRTVEALSKN 758


>SB_36688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = +1

Query: 529 DLSFDILIDKNAGIGSLVVQINTNLCQTLLHLFEIDDFFGLLKTLETICVNENIFDESHV 708
           DL F+I I     +  L ++  T+L   LL  F  +DF   LK+L    V+E + D    
Sbjct: 233 DLKFEIDIPFWLTVMFLYLKYATSLVDPLLFTFFKEDFQRALKSLRRRVVDEWVSDFQFT 292

Query: 709 RF 714
           RF
Sbjct: 293 RF 294


>SB_16870| Best HMM Match : Methyltransf_3 (HMM E-Value=1)
          Length = 766

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +1

Query: 514 QYTVRDLSFDILIDKNAGIGSLVVQINTNLCQTLLHLFEI-DDFFGLLKTLETICVN 681
           Q TV DL    L   +AG   L  ++   LC TL+H  ++ DD   L++T+E +  N
Sbjct: 580 QKTVEDL-VRFLQPSDAGQKQLF-ELTDKLCNTLIHRVKLSDDLKPLIRTVEALSKN 634


>SB_54654| Best HMM Match : rve (HMM E-Value=0.0035)
          Length = 466

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = -1

Query: 698 SSKIFSFTQIVSNVFKRPKKSSISNKCRRV*HKFVLI*TTNDPIPAFLSIKMSNDKSLT 522
           +S +F      +++F R   +++ N+   + H F+   TTND    + SI++ N  + T
Sbjct: 376 TSDLFIRYTTTNDLFNRYTTTNVFNRYTAINHLFIRYTTTNDLFNRYASIELFNRYTTT 434


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,278,403
Number of Sequences: 59808
Number of extensions: 518590
Number of successful extensions: 916
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)