Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0490
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97000-5|AAC47991.1|  393|Caenorhabditis elegans Aspartyl protea...    29   2.9  
U97000-4|AAC47994.1|  395|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U34889-1|AAB06576.1|  388|Caenorhabditis elegans aspartic protea...    29   2.9  

>U97000-5|AAC47991.1|  393|Caenorhabditis elegans Aspartyl protease
           protein 5 protein.
          Length = 393

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -1

Query: 263 RAVLRGIYHWIGIAFHCDDPASYSVGCLL-VGTLHMIVGG 147
           +AV+ G+   +G  +H +D  SY V C   +GTL + +GG
Sbjct: 289 KAVVAGLASALGATYHSNDD-SYYVPCATNIGTLDITIGG 327


>U97000-4|AAC47994.1|  395|Caenorhabditis elegans Hypothetical
           protein F21F8.4 protein.
          Length = 395

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 260 AVLRGIYHWIGIAFHCDDPASYSVGCLLVGTLHMIVGG 147
           AV+ G    +G  +H DD A Y       GTL + +GG
Sbjct: 290 AVINGFAQALGAKYHSDDDAYYLPCSTSKGTLDITIGG 327


>U34889-1|AAB06576.1|  388|Caenorhabditis elegans aspartic protease
           protein.
          Length = 388

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -1

Query: 263 RAVLRGIYHWIGIAFHCDDPASYSVGCLL-VGTLHMIVGG 147
           +AV+ G+   +G  +H +D  SY V C   +GTL + +GG
Sbjct: 284 KAVVAGLASALGATYHSNDD-SYYVPCATNIGTLDITIGG 322


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,933,193
Number of Sequences: 27780
Number of extensions: 378770
Number of successful extensions: 730
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)