Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0490
         (800 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g06490.1 68414.m00688 glycosyl transferase family 48 protein ...    29   2.7  
At3g03730.1 68416.m00378 F-box family protein contains F-box dom...    28   6.3  
At1g57690.1 68414.m06547 F-box family protein contains F-box dom...    28   8.3  

>At1g06490.1 68414.m00688 glycosyl transferase family 48 protein
           contains Pfam profile: PF02364 1,3-beta-glucan synthase
          Length = 1933

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = -2

Query: 724 IRPGNAREIRQRYFRSHKSFPMFLRDRKNHRFRINAEEFDISL 596
           I+P   R++ ++YF+++ S+  +LR     RF    ++  +SL
Sbjct: 298 IKPSTVRKLMEKYFKNYNSWCKYLRCDSYLRFPAGCDKQQLSL 340


>At3g03730.1 68416.m00378 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 393

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 502 RIHQQYTVRDLSFDILIDK-NAGIGSLVVQINTNLCQTLLHLF 627
           R H  YT+RDL FD++  +  A  GS  + ++      LL+LF
Sbjct: 83  RDHSSYTIRDLGFDMVRSRCLASSGSWFLMLDHKTDFHLLNLF 125


>At1g57690.1 68414.m06547 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 330

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 66  PISIYVYQVFCLLLRRNQTPCMLL 137
           P+ I   Q+ CL LR  Q PC L+
Sbjct: 179 PMQIVAPQIHCLKLRNTQLPCTLV 202


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,827,143
Number of Sequences: 28952
Number of extensions: 353378
Number of successful extensions: 670
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)