Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0489
(707 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9GZJ8 Cluster: Mre11; n=1; Bombyx mori|Rep: Mre11 - Bo... 273 3e-72
UniRef50_O04325 Cluster: DNA binding protein (CDC27SH) isolog; n... 36 0.98
UniRef50_A6PES4 Cluster: Putative membrane protein precursor; n=... 36 1.3
UniRef50_A5DVI3 Cluster: Putative uncharacterized protein; n=1; ... 35 2.3
UniRef50_A3UER7 Cluster: Sensor protein; n=1; Oceanicaulis alexa... 34 3.0
UniRef50_Q8YNS4 Cluster: Alr4487 protein; n=2; Nostocaceae|Rep: ... 34 3.9
UniRef50_Q61QG1 Cluster: Putative uncharacterized protein CBG070... 33 5.2
UniRef50_O30320 Cluster: ATP-dependent RNA helicase HepA, putati... 33 5.2
UniRef50_P74898 Cluster: Vacuolar type ATP synthase subunit; n=3... 33 6.9
UniRef50_UPI00015C48BC Cluster: Sel1 repeat family; n=2; Campylo... 33 9.1
>UniRef50_Q9GZJ8 Cluster: Mre11; n=1; Bombyx mori|Rep: Mre11 -
Bombyx mori (Silk moth)
Length = 610
Score = 273 bits (669), Expect = 3e-72
Identities = 139/154 (90%), Positives = 139/154 (90%)
Frame = +1
Query: 4 AADVESLLRAYYEAQPKDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFDAHKRRCIAAL 183
AADVESLLRAYYEAQPKDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFDAHKRRCIAAL
Sbjct: 422 AADVESLLRAYYEAQPKDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFDAHKRRCIAAL 481
Query: 184 LESTAETEKEIAEQLEVCKRELDEADDEKLHTLVDASARPSAPAAQLIVPVVKLPNTVGK 363
LESTAETEKEIAEQLEVCKRELDEADDEKLHTLVDASARPSAPAAQLIVPVVKLPNTVGK
Sbjct: 482 LESTAETEKEIAEQLEVCKRELDEADDEKLHTLVDASARPSAPAAQLIVPVVKLPNTVGK 541
Query: 364 RTIVVLSSDEEELXXXXXXXXXXXXXXXKSPRGK 465
RTIVVLSSDEEEL KSPRGK
Sbjct: 542 RTIVVLSSDEEELSTRSGRGRTTRASRGKSPRGK 575
>UniRef50_O04325 Cluster: DNA binding protein (CDC27SH) isolog; n=4;
Arabidopsis thaliana|Rep: DNA binding protein (CDC27SH)
isolog - Arabidopsis thaliana (Mouse-ear cress)
Length = 717
Score = 35.9 bits (79), Expect = 0.98
Identities = 27/116 (23%), Positives = 46/116 (39%)
Frame = +1
Query: 31 AYYEAQPKDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFDAHKRRCIAALLESTAETEK 210
A +E++ D+ L ++ V+TDA + +L D HK + + L+ A E
Sbjct: 598 ALHESKRNDEALMMMEKAVLTDAKNPLPKYYKAHILTSLGDYHKAQKVLEELKECAPQES 657
Query: 211 EIAEQLEVCKRELDEADDEKLHTLVDASARPSAPAAQLIVPVVKLPNTVGKRTIVV 378
+ L +L + D LH + PS A I P + +I+V
Sbjct: 658 SVHASLGKIYNQLKQYDKAVLHFGIALDLSPSPSDAVKIKVNYSFPVFASQASIMV 713
>UniRef50_A6PES4 Cluster: Putative membrane protein precursor; n=1;
Shewanella sediminis HAW-EB3|Rep: Putative membrane
protein precursor - Shewanella sediminis HAW-EB3
Length = 945
Score = 35.5 bits (78), Expect = 1.3
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 8/113 (7%)
Frame = +1
Query: 10 DVESLLRAY----YEAQPKDKRLSVLSVRVITDAVRDFTLKHNE-DVLRRAFDAHKRRCI 174
D++SLL ++ EA+P+ + ++ + ++ D T+ + D L +FDA
Sbjct: 546 DLDSLLASFDAPAAEAEPEAELTDEIAAELESEESPDDTVSEEDLDSLLASFDAP----- 600
Query: 175 AALLESTAETEKEIAEQLEVCKRELDEADDEKLHTLV---DASARPSAPAAQL 324
A ES AE EIA +LE + D ++E L +L+ DA A + P A+L
Sbjct: 601 AVEAESEAELTDEIAAELESEESPDDNVNEEDLDSLLASFDAPAAEAEPEAEL 653
>UniRef50_A5DVI3 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 1156
Score = 34.7 bits (76), Expect = 2.3
Identities = 20/72 (27%), Positives = 34/72 (47%)
Frame = +1
Query: 187 ESTAETEKEIAEQLEVCKRELDEADDEKLHTLVDASARPSAPAAQLIVPVVKLPNTVGKR 366
E AE +++ E+ E E+D+ D L D+ RP+ + + P +P+TV R
Sbjct: 756 EEEAEKKEKSTEEQEPMDAEMDDVDQMSL----DSKYRPTEKRPRTVYPETTIPDTVDLR 811
Query: 367 TIVVLSSDEEEL 402
+ D E+L
Sbjct: 812 CLQEFIKDAEDL 823
>UniRef50_A3UER7 Cluster: Sensor protein; n=1; Oceanicaulis
alexandrii HTCC2633|Rep: Sensor protein - Oceanicaulis
alexandrii HTCC2633
Length = 1139
Score = 34.3 bits (75), Expect = 3.0
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +1
Query: 127 EDVLRRAFDAHKRRCI--AALLESTAETEKEIAEQLEVCKRELDEADDEKLHTLVDAS 294
E L+RA+D + R A L++ +E ++A+ LEV +RE + A K L AS
Sbjct: 725 EQALKRAYDLLETRVEERTAALKAESEARLQLAQDLEVARREAEAATQSKTRFLAAAS 782
>UniRef50_Q8YNS4 Cluster: Alr4487 protein; n=2; Nostocaceae|Rep:
Alr4487 protein - Anabaena sp. (strain PCC 7120)
Length = 996
Score = 33.9 bits (74), Expect = 3.9
Identities = 21/67 (31%), Positives = 41/67 (61%)
Frame = +1
Query: 172 IAALLESTAETEKEIAEQLEVCKRELDEADDEKLHTLVDASARPSAPAAQLIVPVVKLPN 351
+A +L+S AE+ E ++ ++ + + DE +++ ++A++ P P +I+PV KLP
Sbjct: 437 LAGVLQSFAESP-EYSQWIKDYEAKNDELKEQR----INAASFPYQPVLSIILPVYKLPL 491
Query: 352 TVGKRTI 372
TV + TI
Sbjct: 492 TVLQETI 498
>UniRef50_Q61QG1 Cluster: Putative uncharacterized protein CBG07030;
n=1; Caenorhabditis briggsae|Rep: Putative
uncharacterized protein CBG07030 - Caenorhabditis
briggsae
Length = 549
Score = 33.5 bits (73), Expect = 5.2
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Frame = +1
Query: 118 KHNEDVLRRAFDAHKRRCIAALLESTAETEKEIAEQLEVCKRELDEADDEKLHTLVDASA 297
+ + +R +A + +AA +KEI EQ +R+L E +DE L + AS
Sbjct: 398 REEREAIRNQQEAEYKASLAADKARMEAKQKEIEEQRLEEERKLKEEEDEALRRQLVASQ 457
Query: 298 RP-----SAPAAQLIVPVVKLP 348
P SAP A++I +LP
Sbjct: 458 LPDEPPASAPVAEIINVKFRLP 479
>UniRef50_O30320 Cluster: ATP-dependent RNA helicase HepA, putative;
n=1; Archaeoglobus fulgidus|Rep: ATP-dependent RNA
helicase HepA, putative - Archaeoglobus fulgidus
Length = 943
Score = 33.5 bits (73), Expect = 5.2
Identities = 25/91 (27%), Positives = 43/91 (47%)
Frame = +1
Query: 10 DVESLLRAYYEAQPKDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFDAHKRRCIAALLE 189
+VE +R+YY+ ++ + S+ V I ++ VL+ + RR L E
Sbjct: 261 EVEKYVRSYYKLAEEENKRSIGLVATIVGRAVSSSINAGVQVLKNRY----RR----LFE 312
Query: 190 STAETEKEIAEQLEVCKRELDEADDEKLHTL 282
AE ++ + L+ K+ +E DDEKL L
Sbjct: 313 GFAEELEDAEDILDELKQAEEEGDDEKLEKL 343
>UniRef50_P74898 Cluster: Vacuolar type ATP synthase subunit; n=3;
Thermus thermophilus|Rep: Vacuolar type ATP synthase
subunit - Thermus thermophilus
Length = 120
Score = 33.1 bits (72), Expect = 6.9
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Frame = +1
Query: 181 LLESTAETEKEIAEQLEVCKRELDE----ADDEKLHTLVDASARPSAPAAQ 321
L++S AE EK++ E+LE K+E +E A+ E L +A A+ A AQ
Sbjct: 22 LIKSLAEKEKQLLERLEAAKKEAEERVKRAEAEAKALLEEAEAKAKALEAQ 72
>UniRef50_UPI00015C48BC Cluster: Sel1 repeat family; n=2;
Campylobacter concisus 13826|Rep: Sel1 repeat family -
Campylobacter concisus 13826
Length = 319
Score = 32.7 bits (71), Expect = 9.1
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Frame = +1
Query: 88 ITDAVRDFTLKHNEDVLRRAFDAHKRRC----------IAALLESTAETEKEIAEQLEVC 237
I D DF+ ++++D +R F+ +K C +A +S +K++A+ LE+
Sbjct: 33 IEDNCIDFSRRYSDDEYKRLFEIYKSECELKNLDACIYLAEFYKSGLGVKKDMAKSLEIL 92
Query: 238 KRELDEADDEKLHTL 282
+ DE++ H L
Sbjct: 93 NKACDESNKFACHNL 107
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.317 0.131 0.359
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 571,547,684
Number of Sequences: 1657284
Number of extensions: 9837661
Number of successful extensions: 29711
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 28594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29673
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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