Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0489
         (707 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   5.6  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   7.4  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   7.4  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/38 (28%), Positives = 15/38 (39%)
 Frame = -3

Query: 204 GLCSRFQ*CSNATTFMSIKCPPQDIFIVLKGKIPNCIS 91
           G C     C +       KCPP  +    +G I  C+S
Sbjct: 267 GACHNNGTCLDKVGGFECKCPPGFVGPRCEGDINECLS 304


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 70  QKVSYPSAELHNMHVKVTPHQQ 5
           Q + Y   +  NMH +  PHQQ
Sbjct: 186 QHMMYGGQQGANMHQQGPPHQQ 207


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 70  QKVSYPSAELHNMHVKVTPHQQ 5
           Q + Y   +  NMH +  PHQQ
Sbjct: 188 QHMMYGGQQGANMHQQGPPHQQ 209


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.317    0.131    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,747
Number of Sequences: 336
Number of extensions: 2527
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)