Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0489
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces po...    26   4.6  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    26   4.6  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   4.6  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   8.0  
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    25   8.0  

>SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 172 IAALLESTAETEKEIAEQLEVCKRELD 252
           +  L +  ++ EKE  + LE+CKR LD
Sbjct: 77  VPRLSQLVSKWEKEGVDSLEICKRVLD 103


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 71  YYQSES*LMQFGILPLSTMKMSCGGHLMLINVVALLHYWNL 193
           YY +E+  +  G +PLS   +S       INV + +  WNL
Sbjct: 183 YYANENSSVMRGKIPLSIAVISVAAETHEINVDSGVELWNL 223


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 151  DAHKRRCIAALLESTAETEKEIAEQLEVCKRELDEA 258
            D +KR  +  L E    + KE+A+QLE   RE D A
Sbjct: 1014 DLNKR--VEVLKEEKESSSKELAKQLEDAVREKDSA 1047


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +1

Query: 184  LESTAETEKEIAEQLEVCKRELDEADDEKLHTLVDASARPSAPAAQLIVPVVKLPNTV 357
            LES  +TEK   ++LE    E    + E L +L ++S   S+ A++L   +V   N +
Sbjct: 1277 LESQLQTEKAAVKKLENSNEEYKRHNQEILLSL-NSSTSTSSDASRLKNELVSKENLI 1333


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
 Frame = +1

Query: 76  SVRVITDAVRDFTLKHNEDVLRRAFDAHKRRCIAAL--LESTAETEKEIAEQLEVCKREL 249
           S +  TD+V D   K +E V       H RR   +   +   + +E E  EQ+    +++
Sbjct: 113 SKKKATDSVSD---KIDESVASYDSSTHLRRSSRSKKPVNYNSSSESESEEQISKATKKV 169

Query: 250 DEADDEKLHTLVDASARPSAPAAQLIVPVV--KLPNTVGKR 366
            + ++E+    VD  +  +  ++    PVV  +L   + KR
Sbjct: 170 KQKEEEEYVEEVDEKSLKNESSSDEFEPVVPEQLETPISKR 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.131    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,407,459
Number of Sequences: 5004
Number of extensions: 42562
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)