Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0489
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1482 - 27428208-27428514,27428605-27428906,27431176-274322... 31 0.90
05_04_0183 - 18849749-18850225,18850305-18850431,18851762-18853515 31 1.2
05_01_0217 + 1630083-1630205,1630467-1630710,1631695-1632508,163... 30 1.6
07_03_1539 + 27567397-27568985,27569153-27569279,27569361-27569837 30 2.1
08_02_1473 - 27358162-27358275,27358968-27359024,27359102-273592... 29 2.7
06_03_1053 + 27224824-27225618 29 2.7
07_03_1334 + 25864805-25865328,25865592-25865808 29 3.6
11_06_0637 + 25715516-25716459,25718196-25718355 29 4.8
10_08_0495 - 18318028-18320399,18322450-18322981,18323097-183232... 29 4.8
07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758 29 4.8
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 28 8.4
>08_02_1482 -
27428208-27428514,27428605-27428906,27431176-27432228,
27432305-27432421,27432510-27432843,27433064-27433188,
27433408-27433475,27433555-27433636,27433753-27433866,
27433942-27434042,27434145-27434234,27434615-27434819
Length = 965
Score = 31.1 bits (67), Expect = 0.90
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +1
Query: 34 YYEAQP-KDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFDAHKRRCIAALLESTAETEK 210
Y E P ++ L ++ + +AVRD L H+ LR D K + L E T +
Sbjct: 129 YIEKHPEREFILRFSAIEIYNEAVRDL-LSHDTTPLRLLDDPEKGTTVEKLTEETLRDKD 187
Query: 211 EIAEQLEVCKRE 246
+ L VC+ +
Sbjct: 188 HLRNLLAVCEAQ 199
>05_04_0183 - 18849749-18850225,18850305-18850431,18851762-18853515
Length = 785
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +2
Query: 173 LLHYWNLLQRPKKKLLNN*RFVSESWMKLMMRNS 274
+L+YWNLLQ K+KL + ++ SW+ + + N+
Sbjct: 608 ILNYWNLLQADKEKLWITNK-IAHSWVTVPLENN 640
>05_01_0217 +
1630083-1630205,1630467-1630710,1631695-1632508,
1632775-1632844,1633007-1633239,1633345-1633564
Length = 567
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = +1
Query: 52 KDKRLSVLSVRVIT---DAVRDFTLKHNEDVLRRAFDAHKRRCIAALLESTAETEKEIAE 222
++KR+ + R + +RD +L ED +RR + C A+L + + +K+ E
Sbjct: 68 REKRVGAIEYRHFVCSKEGIRDPSLVKPEDCVRRERALTQMECAASL---SIKLDKKHVE 124
Query: 223 QLEVCKRELDE 255
EVC EL E
Sbjct: 125 HYEVCVSELRE 135
>07_03_1539 + 27567397-27568985,27569153-27569279,27569361-27569837
Length = 730
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/81 (24%), Positives = 35/81 (43%)
Frame = +2
Query: 8 LMWSHFYVHIMKLSRRIRDFLYYQSES*LMQFGILPLSTMKMSCGGHLMLINVVALLHYW 187
L++ + ++ LS + L + + + LP + + G M + +L+YW
Sbjct: 498 LLYGRIFRAVVILSEKSNSDLAVEVSNLAQAYKFLPKVFDRFAGAGGFMFLQDHMILNYW 557
Query: 188 NLLQRPKKKLLNN*RFVSESW 250
NL K KL + V ESW
Sbjct: 558 NLYDFDKAKLWITNK-VKESW 577
>08_02_1473 -
27358162-27358275,27358968-27359024,27359102-27359245,
27359770-27359934,27360020-27360208,27360301-27360535,
27360826-27360932,27361020-27361103,27361185-27361695,
27361793-27361854,27363373-27363456
Length = 583
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/91 (20%), Positives = 39/91 (42%)
Frame = +1
Query: 118 KHNEDVLRRAFDAHKRRCIAALLESTAETEKEIAEQLEVCKRELDEADDEKLHTLVDASA 297
+ +D + +A + + + A E+ + AE+ ++ E ++++ L +
Sbjct: 422 EQQDDEYLASLEADREKELKAEQEAELRRLEAAAEREAAIAKQKQEEEEKRRKQLEEEEL 481
Query: 298 RPSAPAAQLIVPVVKLPNTVGKRTIVVLSSD 390
A Q +P LP+ VG T+VV D
Sbjct: 482 ESKLAAKQASLPKEPLPDDVGAVTVVVRMPD 512
>06_03_1053 + 27224824-27225618
Length = 264
Score = 29.5 bits (63), Expect = 2.7
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = +1
Query: 70 VLSVRVITDAVRDFTLKHN-EDVLRRAFDAHKRRCIAALLESTAETEKEIAEQLEVCKRE 246
+L RV D R K E++ R F+ +RR A+L E+ + A +LE + E
Sbjct: 88 LLLERVSEDDARRLERKLKVEELARGKFELRRRRLTASLKEALVKAGGR-APKLETIQEE 146
Query: 247 LDEADDEKLHTLVDASARPSAPAA 318
D+ DD+ H D+ R A AA
Sbjct: 147 EDDDDDDS-HG--DSKRRRKAAAA 167
>07_03_1334 + 25864805-25865328,25865592-25865808
Length = 246
Score = 29.1 bits (62), Expect = 3.6
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = +1
Query: 172 IAALLESTAETEKEIAEQLEVCKRELDEADDEKLHTLVDASARPSAPAAQLI----VPVV 339
+AA + AE E+E ++ + +++DEKL + +ASAR S A LI V+
Sbjct: 1 MAAAAAAAAEEEEE--KESGSSRMITLKSNDEKLVEVTEASARQSRAIANLIDDGCADVI 58
Query: 340 KLPNTVGKRTIVVLSSDEE 396
LPN K V+ +E
Sbjct: 59 PLPNVDSKTLAKVIPYCDE 77
>11_06_0637 + 25715516-25716459,25718196-25718355
Length = 367
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = +1
Query: 142 RAFDAHKRRCIAALLESTAETEKEIAEQLEVCKRELDEADDEKLHTLVDASARPSAPAA 318
R + +H++ + ++ S +K ++ E+ K + ADD H VDAS+ PS PAA
Sbjct: 300 RLYSSHQQHKVMMMMRSD---DKLNDQKQELAKSKDTPADDN--HEPVDASSVPSPPAA 353
>10_08_0495 -
18318028-18320399,18322450-18322981,18323097-18323200,
18323653-18323701,18323979-18324119,18324889-18324957,
18325048-18325137,18325301-18326251,18326831-18327502
Length = 1659
Score = 28.7 bits (61), Expect = 4.8
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +1
Query: 151 DAHK--RRCIAALLESTAETEKEIAEQLEVCKRELDEADDEKLHTLVDASARPSAPAAQL 324
DA K R A LL+S + E + LE R + E D L + DAS+ + PAA L
Sbjct: 294 DAKKVARGVAAPLLDSVNKLESNMKTNLE---RAMKENDRVYLMRVPDASSLGALPAASL 350
Query: 325 IVP 333
+ P
Sbjct: 351 VKP 353
>07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758
Length = 223
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 175 AALLESTAETEKEIAEQLEVCKRELDEADDEKLHTLVDAS 294
+A + S + A Q+E KR LDE + HT +DAS
Sbjct: 113 SAAVSSVGDLRSSAASQMEALKRRLDEL-HSRAHTDLDAS 151
>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +1
Query: 241 RELDEADDEKLHTLVDASARPSAPAAQLIVPVVKLPNTVGKRTIVVLSSDEE 396
R+ + D++K + S + P ++P+V P T + +V +SSDEE
Sbjct: 2092 RDTPDPDNQKS----ELSGSGNTPTELSVLPLVDAPGTSSEPAVVPVSSDEE 2139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.131 0.359
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,752,502
Number of Sequences: 37544
Number of extensions: 286679
Number of successful extensions: 977
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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