Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0489
         (707 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51620| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.23 
SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)               31   0.69 
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_46284| Best HMM Match : RVT_1 (HMM E-Value=0.48)                    29   3.7  
SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)              28   6.5  
SB_8975| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.5  
SB_2536| Best HMM Match : Arfaptin (HMM E-Value=0.93)                  28   6.5  
SB_52053| Best HMM Match : Cytomega_UL20A (HMM E-Value=1.9)            28   6.5  
SB_38597| Best HMM Match : Arf (HMM E-Value=0.15)                      28   6.5  
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)        28   6.5  
SB_8486| Best HMM Match : Granulin (HMM E-Value=0)                     28   8.5  

>SB_51620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 451

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 19/83 (22%), Positives = 35/83 (42%)
 Frame = +1

Query: 151 DAHKRRCIAALLESTAETEKEIAEQLEVCKRELDEADDEKLHTLVDASARPSAPAAQLIV 330
           D+H  +   A+L  T + E   A    VC+  L    ++K+  +  +S +  AP     +
Sbjct: 144 DSHDSKKDVAVLPKTEQEETVRATSAFVCQASLSNGGNKKVVVIQHSSQQAIAPTVLQTI 203

Query: 331 PVVKLPNTVGKRTIVVLSSDEEE 399
               +P+ V   T  V++    E
Sbjct: 204 ATSSIPSVVNSETAKVVTESVTE 226


>SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)
          Length = 909

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
 Frame = +1

Query: 28  RAYYEAQPKDKRLSV-LSVRVITDAVRDFTLKHNEDVLRRAFDAHKRRCIAALLESTAET 204
           R Y+E Q  +   ++  +   + DA     L+  E+   R  +  K +  A L    A++
Sbjct: 506 RKYFEDQVSEHEATMDFAADNLADAQARLDLRTKEE--NRKIEEAKEK-FAELQTRLAKS 562

Query: 205 EKEIAEQLEVCKRELDEADDEKLHTLVDASARPSAPAAQLIVPVVKLPNTVGKRTIVV 378
            KE+ E+LE  + + + A DE+ + +        A  ++L   V  L    GK  + +
Sbjct: 563 AKELEEELERKREDYNTAADERRYQMAKKKDTLQATRSELETLVKDLSTKTGKERLAL 620


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +1

Query: 127  EDVLRRAFDAHKRRCIAALLESTAETEKEIAEQLEVCKRELDEAD 261
            +D++ R  D  KR  + +      +TE+++A +L+ CK  +DE D
Sbjct: 2646 DDIIERISDTCKRLSLCSY--EPKDTEEDLARKLQECKVLVDEMD 2688


>SB_46284| Best HMM Match : RVT_1 (HMM E-Value=0.48)
          Length = 549

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/30 (56%), Positives = 19/30 (63%)
 Frame = +1

Query: 34  YYEAQPKDKRLSVLSVRVITDAVRDFTLKH 123
           YYEA+ K KRLS +S  V  D V  F LKH
Sbjct: 143 YYEAKKKVKRLSGISKAVRVDPV--FDLKH 170


>SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3511

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 380  CLVMKKNCRHDLDAAVP 430
            C VM +N +HDLD A+P
Sbjct: 2417 CRVMAENAQHDLDEAIP 2433


>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
          Length = 1903

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +1

Query: 118  KHNEDVLRRAFDAHKRRCIAALLESTAETEKEIAEQLEVCKRELDEADDE 267
            KH+  V  R FDA K+  +  LL+S  ++ K       V K    E   E
Sbjct: 1593 KHSYQVFFRCFDARKQVFLGGLLKSLDKSSKSAQAMCHVAKSSGPERQAE 1642


>SB_8975| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1002

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +1

Query: 106 DFTLKHNEDVLRRAFDAHKRRCIAALLESTAETEKEIAEQLEVCKRELDEADD 264
           DF++ H +  L    DAH RR   A   S    ++   ++ E C++E DE DD
Sbjct: 632 DFSIVHRKGSLHGNADAHSRRPCDA--RSCVYCDRLERKEREYCEKE-DELDD 681


>SB_2536| Best HMM Match : Arfaptin (HMM E-Value=0.93)
          Length = 190

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
 Frame = +1

Query: 136 LRRAFDAHKRRC--IAALLESTAETEKEIAE----QLEVCKRELDEADDE 267
           LRRA +AHKR      + LE+    EK+ +E    +L++ K+    AD+E
Sbjct: 120 LRRAIEAHKRNAQNYESCLENLEILEKDESEVDSKRLKIAKKRFRSADEE 169


>SB_52053| Best HMM Match : Cytomega_UL20A (HMM E-Value=1.9)
          Length = 493

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 244 ELDEADDEKLHTLVDASARPSAPAAQLIVPVVKLPNTVGKRTIVVLSSDEEEL 402
           +LD+  DE+   + DA   P  P  ++I P   L  T+ +   V++   E+ L
Sbjct: 421 DLDDESDEEEEVIRDAPTPPPLPVIEVIPPAPPLERTLDECYRVLMHRLEQAL 473


>SB_38597| Best HMM Match : Arf (HMM E-Value=0.15)
          Length = 188

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/66 (25%), Positives = 33/66 (50%)
 Frame = +1

Query: 136 LRRAFDAHKRRCIAALLESTAETEKEIAEQLEVCKRELDEADDEKLHTLVDASARPSAPA 315
           ++R   A K+  +  + ++ AE E+E  E  E  KR  +E+DD+ +      +++ S P+
Sbjct: 64  VKRIDAAEKKAKLERVRKARAEREREEQEAAERAKRMEEESDDDVVIGCGKKTSKRSTPS 123

Query: 316 AQLIVP 333
                P
Sbjct: 124 PDPSTP 129


>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
          Length = 3107

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = +1

Query: 115  LKHNEDVLRRAFDAHKRRCIAALLESTA-ETEK-EIAEQLEVCKRELDEADDE 267
            L +   +LR+ FDA+ +  I+  + +   E EK EI ++L   + ++DE D E
Sbjct: 1133 LNYQIKMLRKNFDANNQELISYKVRTDGLEAEKKEIEKRLAAAQGKMDEGDKE 1185


>SB_8486| Best HMM Match : Granulin (HMM E-Value=0)
          Length = 878

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/47 (34%), Positives = 17/47 (36%)
 Frame = +3

Query: 69  CTISQSHN*CSSGFYP*AQ*RCLAAGI*CS*TSLHCCTIGIYCRDRK 209
           CT    H  C S      Q  C      C    LHCC  G  C D+K
Sbjct: 828 CTCEPYHTCCGSSSAQ--QHCCPLPNASCCSDGLHCCPQGFICDDQK 872


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.131    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,164,641
Number of Sequences: 59808
Number of extensions: 335108
Number of successful extensions: 909
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)