Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0489
(707 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X75304-1|CAA53052.1| 3259|Homo sapiens giantin protein. 32 1.7
D25542-1|BAA05025.1| 3225|Homo sapiens golgi antigen gcp372 prot... 32 1.7
BC054492-1|AAH54492.1| 997|Homo sapiens RABGAP1 protein protein. 30 7.1
BC031621-1|AAH31621.1| 401|Homo sapiens Rab interacting lysosom... 30 7.1
BC004961-1|AAH04961.1| 348|Homo sapiens RILP protein protein. 30 7.1
AL365338-3|CAH70298.1| 997|Homo sapiens RAB GTPase activating p... 30 7.1
AL050195-1|CAB43313.1| 246|Homo sapiens hypothetical protein pr... 30 7.1
AK055755-1|BAB71003.1| 401|Homo sapiens protein ( Homo sapiens ... 30 7.1
AJ404317-1|CAC33443.1| 401|Homo sapiens rab interacting lysosom... 30 7.1
AJ278711-1|CAC82174.1| 401|Homo sapiens hypothetical protein pr... 30 7.1
AJ011679-1|CAB40267.2| 997|Homo sapiens Rab6 GTPase activating ... 30 7.1
BC117375-1|AAI17376.1| 722|Homo sapiens chromosome 14 open read... 30 9.3
BC113655-1|AAI13656.1| 722|Homo sapiens chromosome 14 open read... 30 9.3
>X75304-1|CAA53052.1| 3259|Homo sapiens giantin protein.
Length = 3259
Score = 32.3 bits (70), Expect = 1.7
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = +1
Query: 19 SLLRAYYEAQPKDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFDAHKRRCIAALLESTA 198
+LL A D+ +S +S+ I + + +DVL F + K + ++ LL
Sbjct: 509 TLLEAQNRTGEADREVSEISIVDIANKRSSSAEESGQDVLENTF-SQKHKELSVLLLEMK 567
Query: 199 ETEKEIAE-QLEVCKRELDEADDEKL 273
E ++EIA +L++ + +EAD E L
Sbjct: 568 EAQEEIAFLKLQLQGKRAEEADHEVL 593
>D25542-1|BAA05025.1| 3225|Homo sapiens golgi antigen gcp372
protein.
Length = 3225
Score = 32.3 bits (70), Expect = 1.7
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = +1
Query: 19 SLLRAYYEAQPKDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFDAHKRRCIAALLESTA 198
+LL A D+ +S +S+ I + + +DVL F + K + ++ LL
Sbjct: 475 TLLEAQNRTGEADREVSEISIVDIANKRSSSAEESGQDVLENTF-SQKHKELSVLLLEMK 533
Query: 199 ETEKEIAE-QLEVCKRELDEADDEKL 273
E ++EIA +L++ + +EAD E L
Sbjct: 534 EAQEEIAFLKLQLQGKRAEEADHEVL 559
>BC054492-1|AAH54492.1| 997|Homo sapiens RABGAP1 protein protein.
Length = 997
Score = 30.3 bits (65), Expect = 7.1
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 130 DVLRRAFDAHKRRCIAALLESTAETEKEIAEQLEVCKRELDEADDE 267
D L + K++ I A E E+E A+ E+C+RELD+A+ E
Sbjct: 810 DALNKELLMTKQKLIDAE-EEKRRLEEESAQLKEMCRRELDKAESE 854
>BC031621-1|AAH31621.1| 401|Homo sapiens Rab interacting lysosomal
protein protein.
Length = 401
Score = 30.3 bits (65), Expect = 7.1
Identities = 19/82 (23%), Positives = 36/82 (43%)
Frame = +1
Query: 25 LRAYYEAQPKDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFDAHKRRCIAALLESTAET 204
LR A P+++R + ++ +TD RD HN D+ +R + + L+
Sbjct: 98 LRRELRAGPQEERALLRQLKEVTDRQRDELRAHNRDLRQR---GQETEALQEQLQRLLLV 154
Query: 205 EKEIAEQLEVCKRELDEADDEK 270
E+ +L + +L A D +
Sbjct: 155 NAELRHKLAAMQTQLRAAQDRE 176
>BC004961-1|AAH04961.1| 348|Homo sapiens RILP protein protein.
Length = 348
Score = 30.3 bits (65), Expect = 7.1
Identities = 19/82 (23%), Positives = 36/82 (43%)
Frame = +1
Query: 25 LRAYYEAQPKDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFDAHKRRCIAALLESTAET 204
LR A P+++R + ++ +TD RD HN D+ +R + + L+
Sbjct: 45 LRRELRAGPQEERALLRQLKEVTDRQRDELRAHNRDLRQR---GQETEALQEQLQRLLLV 101
Query: 205 EKEIAEQLEVCKRELDEADDEK 270
E+ +L + +L A D +
Sbjct: 102 NAELRHKLAAMQTQLRAAQDRE 123
>AL365338-3|CAH70298.1| 997|Homo sapiens RAB GTPase activating
protein 1 protein.
Length = 997
Score = 30.3 bits (65), Expect = 7.1
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 130 DVLRRAFDAHKRRCIAALLESTAETEKEIAEQLEVCKRELDEADDE 267
D L + K++ I A E E+E A+ E+C+RELD+A+ E
Sbjct: 810 DALNKELLMTKQKLIDAE-EEKRRLEEESAQLKEMCRRELDKAESE 854
>AL050195-1|CAB43313.1| 246|Homo sapiens hypothetical protein
protein.
Length = 246
Score = 30.3 bits (65), Expect = 7.1
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 130 DVLRRAFDAHKRRCIAALLESTAETEKEIAEQLEVCKRELDEADDE 267
D L + K++ I A E E+E A+ E+C+RELD+A+ E
Sbjct: 59 DALNKELLMTKQKLIDAE-EEKRRLEEESAQLKEMCRRELDKAESE 103
>AK055755-1|BAB71003.1| 401|Homo sapiens protein ( Homo sapiens
cDNA FLJ31193 fis, clone KIDNE2000497, weakly similar to
TRICHOHYALIN. ).
Length = 401
Score = 30.3 bits (65), Expect = 7.1
Identities = 19/82 (23%), Positives = 36/82 (43%)
Frame = +1
Query: 25 LRAYYEAQPKDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFDAHKRRCIAALLESTAET 204
LR A P+++R + ++ +TD RD HN D+ +R + + L+
Sbjct: 98 LRRELRAGPQEERALLRQLKEVTDRQRDELRAHNRDLRQR---GQETEALQEQLQRLLLV 154
Query: 205 EKEIAEQLEVCKRELDEADDEK 270
E+ +L + +L A D +
Sbjct: 155 NAELRHKLAAMQTQLRAAQDRE 176
>AJ404317-1|CAC33443.1| 401|Homo sapiens rab interacting lysosomal
protein protein.
Length = 401
Score = 30.3 bits (65), Expect = 7.1
Identities = 19/82 (23%), Positives = 36/82 (43%)
Frame = +1
Query: 25 LRAYYEAQPKDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFDAHKRRCIAALLESTAET 204
LR A P+++R + ++ +TD RD HN D+ +R + + L+
Sbjct: 98 LRRELRAGPQEERALLRQLKEVTDRQRDELRAHNRDLRQR---GQETEALQEQLQRLLLV 154
Query: 205 EKEIAEQLEVCKRELDEADDEK 270
E+ +L + +L A D +
Sbjct: 155 NAELRHKLAAMQTQLRAAQDRE 176
>AJ278711-1|CAC82174.1| 401|Homo sapiens hypothetical protein
protein.
Length = 401
Score = 30.3 bits (65), Expect = 7.1
Identities = 19/82 (23%), Positives = 36/82 (43%)
Frame = +1
Query: 25 LRAYYEAQPKDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFDAHKRRCIAALLESTAET 204
LR A P+++R + ++ +TD RD HN D+ +R + + L+
Sbjct: 98 LRRELRAGPQEERALLRQLKEVTDRQRDELRAHNRDLRQR---GQETEALQEQLQRLLLV 154
Query: 205 EKEIAEQLEVCKRELDEADDEK 270
E+ +L + +L A D +
Sbjct: 155 NAELRHKLAAMQTQLRAAQDRE 176
>AJ011679-1|CAB40267.2| 997|Homo sapiens Rab6 GTPase activating
protein, GAPCenA protein.
Length = 997
Score = 30.3 bits (65), Expect = 7.1
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 130 DVLRRAFDAHKRRCIAALLESTAETEKEIAEQLEVCKRELDEADDE 267
D L + K++ I A E E+E A+ E+C+RELD+A+ E
Sbjct: 810 DALNKELLMTKQKLIDAE-EEKRRLEEESAQLKEMCRRELDKAESE 854
>BC117375-1|AAI17376.1| 722|Homo sapiens chromosome 14 open reading
frame 73 protein.
Length = 722
Score = 29.9 bits (64), Expect = 9.3
Identities = 16/48 (33%), Positives = 30/48 (62%)
Frame = +1
Query: 13 VESLLRAYYEAQPKDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFDA 156
+E+L+R+Y + + +D L++L++R + L+H ED+LR A A
Sbjct: 648 LETLIRSYPDIR-RDHILAILALRRLGRRRNQHLLQHTEDLLRAAAGA 694
>BC113655-1|AAI13656.1| 722|Homo sapiens chromosome 14 open reading
frame 73 protein.
Length = 722
Score = 29.9 bits (64), Expect = 9.3
Identities = 16/48 (33%), Positives = 30/48 (62%)
Frame = +1
Query: 13 VESLLRAYYEAQPKDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFDA 156
+E+L+R+Y + + +D L++L++R + L+H ED+LR A A
Sbjct: 648 LETLIRSYPDIR-RDHILAILALRRLGRRRNQHLLQHTEDLLRAAAGA 694
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.317 0.131 0.359
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,139,912
Number of Sequences: 237096
Number of extensions: 1481546
Number of successful extensions: 4065
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4065
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8231208258
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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