Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0489
(707 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032643-4|CAA21662.1| 436|Caenorhabditis elegans Hypothetical ... 31 0.61
AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical ... 31 0.61
Z78064-5|CAB01511.1| 473|Caenorhabditis elegans Hypothetical pr... 31 0.81
Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z81062-13|CAB82210.1| 333|Caenorhabditis elegans Hypothetical p... 29 3.3
U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr... 29 3.3
U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr... 29 3.3
D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein. 28 5.7
D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein. 28 5.7
AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical ... 28 5.7
AF003139-10|AAB54160.3| 294|Caenorhabditis elegans Hypothetical... 28 5.7
AC006834-10|AAF40005.1| 745|Caenorhabditis elegans Hypothetical... 28 5.7
Z81037-1|CAB02745.1| 819|Caenorhabditis elegans Hypothetical pr... 27 9.9
AF025451-4|AAL16306.1| 567|Caenorhabditis elegans Hypothetical ... 27 9.9
>AL032643-4|CAA21662.1| 436|Caenorhabditis elegans Hypothetical
protein Y54E5A.6 protein.
Length = 436
Score = 31.5 bits (68), Expect = 0.61
Identities = 16/62 (25%), Positives = 33/62 (53%)
Frame = +1
Query: 37 YEAQPKDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFDAHKRRCIAALLESTAETEKEI 216
Y + DK+L + + RV+ +A+ ++ +D++ R K RCI + ++ E +I
Sbjct: 35 YTEEIVDKKL-IEATRVVNEALGTIDYRNGDDIILRLAPEEKGRCILQIGTNSGEKAAKI 93
Query: 217 AE 222
A+
Sbjct: 94 AQ 95
>AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical
protein C07H6.3 protein.
Length = 1378
Score = 31.5 bits (68), Expect = 0.61
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = -2
Query: 547 ISELPNASEFCVPAARGQVPKP*SLGCSFLEETF 446
I+EL +A EF + R Q+ + ++ CSFL ETF
Sbjct: 421 INELADALEFSIRDLRSQIVREAAVTCSFLFETF 454
>Z78064-5|CAB01511.1| 473|Caenorhabditis elegans Hypothetical
protein F57B1.2 protein.
Length = 473
Score = 31.1 bits (67), Expect = 0.81
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +1
Query: 94 DAVRDFTLKHNEDVLRRAFDAHKRRCIAAL--LESTAETEKEIAEQLEVCKRELDEADDE 267
D DF H E +L + K +A+ L+ + EI++ L+ K+E+D+A
Sbjct: 174 DKQLDFKTDHLEKLLENVLEHSKGWKESAIEELKQIKLWQAEISDALQQMKKEIDDAKST 233
Query: 268 KLHTLVDASARPSAPAAQL 324
K+ A +AP A L
Sbjct: 234 KIIHSTPEKAPETAPTASL 252
>Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical
protein F59A2.6 protein.
Length = 1133
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 151 DAHKRRCIAALLESTAETE-KEIAEQLEVCKRELDEADDEK 270
DA R + LES + EI +Q+E K+EL+ ++ EK
Sbjct: 272 DAENERNLKTALESDESSAISEITKQMEAAKKELEASEKEK 312
>Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical
protein F59A2.6 protein.
Length = 1133
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 151 DAHKRRCIAALLESTAETE-KEIAEQLEVCKRELDEADDEK 270
DA R + LES + EI +Q+E K+EL+ ++ EK
Sbjct: 272 DAENERNLKTALESDESSAISEITKQMEAAKKELEASEKEK 312
>Z81062-13|CAB82210.1| 333|Caenorhabditis elegans Hypothetical
protein F15A4.13 protein.
Length = 333
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -2
Query: 664 AEMMILENQL*SIINQSH-FRYR*NRGDDWSS*YSEATMWISELPNASEFCVPAARGQVP 488
A +ILE+++ SI N+ F Y R D + A ++I+ +P S +C G+VP
Sbjct: 272 AYQVILEDEIFSIYNEVFTFGYEIERSCD----ETRAAIFINSMPEVSHYCFRMIVGEVP 327
>U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical
protein C18C4.5b protein.
Length = 1046
Score = 29.1 bits (62), Expect = 3.3
Identities = 23/79 (29%), Positives = 38/79 (48%)
Frame = +1
Query: 22 LLRAYYEAQPKDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFDAHKRRCIAALLESTAE 201
LL A AQ ++ + + R+IT D + +D LRR + +++ +E+ E
Sbjct: 307 LLAAESRAQQAEEDVRDMKERIITSKKDDDSNNLLQDELRRTEEKYQQ--AQKKIENLDE 364
Query: 202 TEKEIAEQLEVCKRELDEA 258
T K+ Q+ R LDEA
Sbjct: 365 TIKQQETQIRDLGRSLDEA 383
>U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical
protein C18C4.5a protein.
Length = 1022
Score = 29.1 bits (62), Expect = 3.3
Identities = 23/79 (29%), Positives = 38/79 (48%)
Frame = +1
Query: 22 LLRAYYEAQPKDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFDAHKRRCIAALLESTAE 201
LL A AQ ++ + + R+IT D + +D LRR + +++ +E+ E
Sbjct: 307 LLAAESRAQQAEEDVRDMKERIITSKKDDDSNNLLQDELRRTEEKYQQ--AQKKIENLDE 364
Query: 202 TEKEIAEQLEVCKRELDEA 258
T K+ Q+ R LDEA
Sbjct: 365 TIKQQETQIRDLGRSLDEA 383
>D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 28.3 bits (60), Expect = 5.7
Identities = 21/88 (23%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Frame = +1
Query: 22 LLRAYYEAQPKDKRLSVLS--VRVITDAVRDFTLKHNEDVLRRAFDAHKRRCIAALLEST 195
L RA A+ + ++ L +RV+ + ++ + + + R + R +++ L+
Sbjct: 176 LERAEERAEAGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRTVSSRLKE- 234
Query: 196 AETEKEIAEQ-LEVCKRELDEADDEKLH 276
AET E AE+ ++ ++E+D +DE +H
Sbjct: 235 AETRAEFAERSVQKLQKEVDRLEDELVH 262
>D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 28.3 bits (60), Expect = 5.7
Identities = 21/88 (23%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Frame = +1
Query: 22 LLRAYYEAQPKDKRLSVLS--VRVITDAVRDFTLKHNEDVLRRAFDAHKRRCIAALLEST 195
L RA A+ + ++ L +RV+ + ++ + + + R + R +++ L+
Sbjct: 176 LERAEERAEAGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRTVSSRLKE- 234
Query: 196 AETEKEIAEQ-LEVCKRELDEADDEKLH 276
AET E AE+ ++ ++E+D +DE +H
Sbjct: 235 AETRAEFAERSVQKLQKEVDRLEDELVH 262
>AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1a protein.
Length = 284
Score = 28.3 bits (60), Expect = 5.7
Identities = 21/88 (23%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Frame = +1
Query: 22 LLRAYYEAQPKDKRLSVLS--VRVITDAVRDFTLKHNEDVLRRAFDAHKRRCIAALLEST 195
L RA A+ + ++ L +RV+ + ++ + + + R + R +++ L+
Sbjct: 176 LERAEERAEAGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRTVSSRLKE- 234
Query: 196 AETEKEIAEQ-LEVCKRELDEADDEKLH 276
AET E AE+ ++ ++E+D +DE +H
Sbjct: 235 AETRAEFAERSVQKLQKEVDRLEDELVH 262
>AF003139-10|AAB54160.3| 294|Caenorhabditis elegans Hypothetical
protein F53G12.4 protein.
Length = 294
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/85 (18%), Positives = 38/85 (44%)
Frame = +1
Query: 136 LRRAFDAHKRRCIAALLESTAETEKEIAEQLEVCKRELDEADDEKLHTLVDASARPSAPA 315
+R+ + + R +A L + + + + + +EKL T D +P+A
Sbjct: 101 MRKRMEMERER-LARLSNQAEDDSDDSSSSSDSSTSSASSSSEEKL-TFSDILGKPTAAG 158
Query: 316 AQLIVPVVKLPNTVGKRTIVVLSSD 390
A+ ++ + ++PN G +++ D
Sbjct: 159 AEKMIELSQIPNAWGPSKSALVTDD 183
>AC006834-10|AAF40005.1| 745|Caenorhabditis elegans Hypothetical
protein ZK973.1 protein.
Length = 745
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +1
Query: 178 ALLESTAETEKEIAEQLEVCKRELDEADDE--KLHTLVDASARPSAPAAQLIVPVVKLPN 351
+LL + +T K++ E L++C +L D+E K+ +D + +A+L K
Sbjct: 156 SLLSNGLKTVKDVEEHLKICLADLINRDEEVRKVSANIDILKKECRVSAKLSREAEKNRK 215
Query: 352 TVGKRTIV 375
+ KR I+
Sbjct: 216 DLEKRGII 223
>Z81037-1|CAB02745.1| 819|Caenorhabditis elegans Hypothetical
protein C17E4.2 protein.
Length = 819
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +1
Query: 103 RDFTLKHNEDVLRRAFDAHKRRCIAALL---ESTAETEKEIAEQLEVCKRELDEADDEKL 273
RD + ED LR + +AALL E A ++KE +E CK++++E +++
Sbjct: 461 RDVEIARLEDELR-VTKMESGKDMAALLRDFEKFAISDKESKRMVEGCKKKIEELEEQNR 519
Query: 274 HTLVD 288
V+
Sbjct: 520 FLTVE 524
>AF025451-4|AAL16306.1| 567|Caenorhabditis elegans Hypothetical
protein C24H12.4b protein.
Length = 567
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +1
Query: 187 ESTAETEKEIAEQLEVCKRELDEADDEKLHTLVDASARPS----APAAQLIVPVVKL 345
+S AE +++ E L ++DE D E H D S PS AP +LI + KL
Sbjct: 61 KSQAEKRQKLMESL--VGPQVDEMDFEPEHKTNDGSVGPSAVIIAPTKELITQIYKL 115
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.131 0.359
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,505,204
Number of Sequences: 27780
Number of extensions: 250316
Number of successful extensions: 857
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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