Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0489
         (707 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57420.1 68416.m06393 expressed protein contains Pfam domain ...    36   0.035
At3g16320.1 68416.m02061 cell division cycle family protein / CD...    35   0.061
At3g18380.2 68416.m02338 expressed protein                             32   0.32 
At2g41770.1 68415.m05163 expressed protein contains Pfam domain ...    32   0.43 
At5g23770.1 68418.m02791 agenet domain-containing protein contai...    30   1.3  
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu...    29   3.0  
At5g64660.1 68418.m08126 U-box domain-containing protein similar...    28   5.3  
At3g18380.1 68416.m02337 expressed protein                             28   5.3  
At1g02690.2 68414.m00220 importin alpha-2 subunit, putative simi...    28   7.0  
At1g06730.1 68414.m00715 pfkB-type carbohydrate kinase family pr...    27   9.2  

>At3g57420.1 68416.m06393 expressed protein contains Pfam domain
           PF03385: Protein of unknown function, DUF288
          Length = 765

 Score = 35.5 bits (78), Expect = 0.035
 Identities = 24/81 (29%), Positives = 37/81 (45%)
 Frame = +2

Query: 8   LMWSHFYVHIMKLSRRIRDFLYYQSES*LMQFGILPLSTMKMSCGGHLMLINVVALLHYW 187
           L++   +  ++ LS R    LY Q       +  LP    + S     + +    +L+YW
Sbjct: 532 LLYGRIFKTVVILSSRKNSDLYVQEAKLDHIYKRLPKIFDRYSSADGFVFVEDDTVLNYW 591

Query: 188 NLLQRPKKKLLNN*RFVSESW 250
           NLLQ  K KL    + V+ESW
Sbjct: 592 NLLQADKTKLWTTDK-VTESW 611


>At3g16320.1 68416.m02061 cell division cycle family protein / CDC
           family protein similar to SP|P30260|CC27_HUMAN Protein
           CDC27Hs (Cell division cycle protein 27 homolog) Homo
           sapiens, C-terminus similar to C-term of cell division
           control protein 27 SP:P38042 (Saccharomyces cerevisiae);
           contains Pfam profile PF00515 TPR Domain
          Length = 727

 Score = 34.7 bits (76), Expect = 0.061
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
 Frame = +1

Query: 31  AYYEAQPKDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFDAHKRRCIAALLESTAETEK 210
           A +E++  D+ L ++   V+TDA       +   +L    D HK + +   L+  A  E 
Sbjct: 610 ALHESKRNDEALMMMEKAVLTDAKNPLPKYYKAHILTSLGDYHKAQKVLEELKECAPQES 669

Query: 211 EIAEQLEVCKRELDEADDEKLH--TLVDASARPS 306
            +   L     +L + D   LH    +D S  PS
Sbjct: 670 SVHASLGKIYNQLKQYDKAVLHFGIALDLSPSPS 703


>At3g18380.2 68416.m02338 expressed protein
          Length = 349

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 19/90 (21%), Positives = 41/90 (45%)
 Frame = +1

Query: 130 DVLRRAFDAHKRRCIAALLESTAETEKEIAEQLEVCKRELDEADDEKLHTLVDASARPSA 309
           D  RR  D    RC   +  S  ++E+EI    ++C+R   +   ++LH  V+  A  + 
Sbjct: 235 DAQRRRHDVRGCRCRFLVRYSHDQSEQEIVPLRKICRRPETDYRLQQLHNAVNDLANSNQ 294

Query: 310 PAAQLIVPVVKLPNTVGKRTIVVLSSDEEE 399
                +    K P ++   T+ +++ + ++
Sbjct: 295 HQIPALDAAAKTPLSLPGATVPIVAPESKD 324


>At2g41770.1 68415.m05163 expressed protein contains Pfam domain
           PF03385: Protein of unknown function, DUF288
          Length = 771

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 21/81 (25%), Positives = 37/81 (45%)
 Frame = +2

Query: 8   LMWSHFYVHIMKLSRRIRDFLYYQSES*LMQFGILPLSTMKMSCGGHLMLINVVALLHYW 187
           L++   +  ++ LS +    LY +       +  LP    + S     + +    +L+YW
Sbjct: 539 LLYGRIFKTVVILSSQKNSDLYVEEAKLDHIYKHLPKIFDRYSSAEGFLFVEDDTVLNYW 598

Query: 188 NLLQRPKKKLLNN*RFVSESW 250
           NLLQ  K K+    + VS+SW
Sbjct: 599 NLLQADKSKIWTTDK-VSKSW 618


>At5g23770.1 68418.m02791 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 438

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +1

Query: 139 RRAFDAHKRRCIAALLESTAETEKEIAEQLEVCKRELDEADDEKLHTLVDASA 297
           + +  A  +R I  L     E +KEIA+      + + + DD KL  L  ASA
Sbjct: 384 KESVKAENKRKILELQRLNEEMDKEIAQSKSCAAKIVQQLDDVKLEFLATASA 436


>At1g79280.1 68414.m09242 expressed protein weak similarity to
            Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
          Length = 2111

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/76 (26%), Positives = 35/76 (46%)
 Frame = +1

Query: 40   EAQPKDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFDAHKRRCIAALLESTAETEKEIA 219
            E + K+KR+ +L   V    ++D   K  ED+ ++  +  K R            EKE+ 
Sbjct: 1512 EREEKEKRIQILDKYV--HQLKDEVRKKTEDLKKKDEELTKER------SERKSVEKEVG 1563

Query: 220  EQLEVCKRELDEADDE 267
            + L   K+E  + D+E
Sbjct: 1564 DSLTKIKKEKTKVDEE 1579


>At5g64660.1 68418.m08126 U-box domain-containing protein similar to
           immediate-early fungal elicitor protein CMPG1
           [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 420

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +1

Query: 151 DAHKRRCIAALLESTAETEKEIAEQLEVCKRELDEADDEKLHTLVDASARPS 306
           D+ +RR      E  A T  EIA+ ++  K E +E DD ++ + +    R S
Sbjct: 78  DSVRRRTCVESAELAAPTRDEIADAIDRVKIEKEERDDREVLSKIVRFGRES 129


>At3g18380.1 68416.m02337 expressed protein
          Length = 348

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/90 (20%), Positives = 40/90 (44%)
 Frame = +1

Query: 130 DVLRRAFDAHKRRCIAALLESTAETEKEIAEQLEVCKRELDEADDEKLHTLVDASARPSA 309
           D  RR  D    RC   L+  + +  +EI    ++C+R   +   ++LH  V+  A  + 
Sbjct: 235 DAQRRRHDVRGCRC-RFLVRYSHDQSEEIVPLRKICRRPETDYRLQQLHNAVNDLANSNQ 293

Query: 310 PAAQLIVPVVKLPNTVGKRTIVVLSSDEEE 399
                +    K P ++   T+ +++ + ++
Sbjct: 294 HQIPALDAAAKTPLSLPGATVPIVAPESKD 323


>At1g02690.2 68414.m00220 importin alpha-2 subunit, putative similar
           to importin alpha-2 subunit (Karyopherin alpha-2
           subunit) (KAP alpha) SP:O04294 from [Arabidopsis
           thaliana]
          Length = 539

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
 Frame = +1

Query: 145 AFDAHKRRCIAALLESTAETEKEIAEQLEVCKRELDEADDEKLHTLVDASARP------S 306
           AF+   +  + AL      T++E+          L +  +EK+ T++DA   P      +
Sbjct: 240 AFEQQTKAALPALERLLHSTDEEVLTDASWALSYLSDGTNEKIQTVIDAGVIPRLVQLLA 299

Query: 307 APAAQLIVPVVK 342
            P+  +++P ++
Sbjct: 300 HPSPSVLIPALR 311


>At1g06730.1 68414.m00715 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 488

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -1

Query: 134 TSSLCLRVKSRTASV--MTLTDSTESLLSFG 48
           TSS+CLR +S  A V  +   D + S+ SFG
Sbjct: 43  TSSVCLRCRSSAADVSPVIYADGSSSICSFG 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.131    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,549,597
Number of Sequences: 28952
Number of extensions: 223281
Number of successful extensions: 668
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)