Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0488
         (750 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1HRW2 Cluster: CCAAT-binding factor, subunit A; n=2; C...    37   0.61 
UniRef50_UPI0000519ECA Cluster: PREDICTED: similar to Nuclear tr...    35   2.5  
UniRef50_Q8ST61 Cluster: RH50436p; n=2; Sophophora|Rep: RH50436p...    34   4.3  
UniRef50_O76256 Cluster: Nuclear factor Y transcription factor s...    33   5.7  
UniRef50_A7PL27 Cluster: Chromosome chr7 scaffold_20, whole geno...    33   9.9  

>UniRef50_Q1HRW2 Cluster: CCAAT-binding factor, subunit A; n=2;
           Culicidae|Rep: CCAAT-binding factor, subunit A - Aedes
           aegypti (Yellowfever mosquito)
          Length = 184

 Score = 36.7 bits (81), Expect = 0.61
 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
 Frame = +2

Query: 20  FDNYVKPLRLYLTKYREIV----MSPALFAGHNQQIE 118
           FDNY +PL+LYL+KYR+ +     SP     H QQ E
Sbjct: 110 FDNYCEPLKLYLSKYRDSIKAERSSPEQTPEHQQQYE 146


>UniRef50_UPI0000519ECA Cluster: PREDICTED: similar to Nuclear
           transcription factor Y subunit beta (Nuclear
           transcription factor Y subunit B) (NF-YB) (CAAT-box
           DNA-binding protein subunit B); n=2; Endopterygota|Rep:
           PREDICTED: similar to Nuclear transcription factor Y
           subunit beta (Nuclear transcription factor Y subunit B)
           (NF-YB) (CAAT-box DNA-binding protein subunit B) - Apis
           mellifera
          Length = 219

 Score = 34.7 bits (76), Expect = 2.5
 Identities = 13/17 (76%), Positives = 16/17 (94%)
 Frame = +2

Query: 20  FDNYVKPLRLYLTKYRE 70
           FDNYV+PL++YL KYRE
Sbjct: 142 FDNYVEPLKVYLQKYRE 158


>UniRef50_Q8ST61 Cluster: RH50436p; n=2; Sophophora|Rep: RH50436p -
           Drosophila melanogaster (Fruit fly)
          Length = 156

 Score = 33.9 bits (74), Expect = 4.3
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +2

Query: 20  FDNYVKPLRLYLTKYRE 70
           FDNYV+PL +YL KYRE
Sbjct: 111 FDNYVEPLSIYLQKYRE 127


>UniRef50_O76256 Cluster: Nuclear factor Y transcription factor
           subunit B homolog; n=2; Schistosoma|Rep: Nuclear factor
           Y transcription factor subunit B homolog - Schistosoma
           mansoni (Blood fluke)
          Length = 242

 Score = 33.5 bits (73), Expect = 5.7
 Identities = 12/18 (66%), Positives = 16/18 (88%)
 Frame = +2

Query: 20  FDNYVKPLRLYLTKYREI 73
           FDNY++PLR +L K+REI
Sbjct: 97  FDNYIEPLRAFLVKFREI 114


>UniRef50_A7PL27 Cluster: Chromosome chr7 scaffold_20, whole genome
           shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
           chr7 scaffold_20, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 654

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = +2

Query: 20  FDNYVKPLRLYLTKYRE 70
           F+NYV PL++YL+KYRE
Sbjct: 548 FENYVGPLKVYLSKYRE 564


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 640,227,920
Number of Sequences: 1657284
Number of extensions: 11816298
Number of successful extensions: 24137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 23491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24135
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)