Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0488
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    31   0.18 
SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3 |S...    27   2.9  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    26   5.0  

>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 16/42 (38%), Positives = 27/42 (64%)
 Frame = -1

Query: 345 NNILIDFKINQHNTITHSQKGYFNTATILIM*E*ILQRLLDK 220
           +NIL  +K++  + I+HS+K +F+ AT L     IL+ LL +
Sbjct: 294 DNILQQWKLSFFSKISHSEKSFFSNATSLTTLYQILEGLLSE 335


>SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 116

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 20  FDNYVKPLRLYLTKYRE 70
           F+NY + L++ LTKYRE
Sbjct: 80  FENYAEVLKISLTKYRE 96


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 48  CT*QNIEKLLCHQPYLQVTINKLNKTIVLYSEDGTACVSNE 170
           CT Q+ E     +  LQ  +N+ ++ I+ YS    +CV +E
Sbjct: 146 CTYQDCELRFATKQKLQNHVNRAHEKIISYSCPHESCVGHE 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,825,508
Number of Sequences: 5004
Number of extensions: 56668
Number of successful extensions: 135
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)