Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0488
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0092 - 41021743-41022276                                         32   0.42 
05_05_0135 - 22626163-22626198,22626391-22626441,22626516-226266...    31   0.98 
08_01_0783 + 7585326-7585477,7586420-7586589,7586687-7586801,758...    30   1.7  
07_03_1205 - 24865991-24866077,24866255-24866259,24867746-24868343     30   1.7  
01_06_1252 - 35748000-35748173,35748243-35748375,35749771-357498...    30   1.7  
04_04_1094 - 30832987-30833316,30833530-30834273,30834484-308347...    30   2.3  
05_07_0196 + 28352320-28352522,28352679-28352808,28353774-283538...    29   3.0  
02_05_0591 - 30183105-30183869                                         29   3.0  
03_04_0055 + 16891212-16891848,16893166-16893206                       28   6.9  

>01_07_0092 - 41021743-41022276
          Length = 177

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +2

Query: 20  FDNYVKPLRLYLTKYREI 73
           FD+YV P+R YL KYRE+
Sbjct: 107 FDDYVDPMRRYLNKYREL 124


>05_05_0135 -
           22626163-22626198,22626391-22626441,22626516-22626608,
           22627249-22627254,22628051-22628180,22628333-22628583
          Length = 188

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 10/18 (55%), Positives = 17/18 (94%)
 Frame = +2

Query: 20  FDNYVKPLRLYLTKYREI 73
           F++Y++PL++YL KYRE+
Sbjct: 111 FEDYIEPLKVYLQKYREM 128


>08_01_0783 +
           7585326-7585477,7586420-7586589,7586687-7586801,
           7586887-7587055,7587185-7587319,7587409-7587728,
           7587992-7588127,7588224-7588472,7588567-7588787,
           7588906-7589164,7589264-7589971,7590095-7590424
          Length = 987

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 457 AKFVQAWFMYPSVYFI*EINISPTIFL 377
           A F Q W+ YP  YFI  +  SPT F+
Sbjct: 774 AVFTQFWYWYPLTYFI-SLAFSPTAFI 799


>07_03_1205 - 24865991-24866077,24866255-24866259,24867746-24868343
          Length = 229

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 20  FDNYVKPLRLYLTKYREIVMSPALFA 97
           F++Y+ PL+LYL K+RE+    A+ A
Sbjct: 95  FEDYIDPLKLYLHKFRELEGEKAIGA 120


>01_06_1252 -
           35748000-35748173,35748243-35748375,35749771-35749847,
           35750465-35750509,35750584-35750679,35751125-35751130,
           35751259-35751388,35751510-35751706
          Length = 285

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +2

Query: 20  FDNYVKPLRLYLTKYREI 73
           F+ YV PL++YL KYRE+
Sbjct: 93  FEEYVDPLKIYLHKYREM 110


>04_04_1094 -
           30832987-30833316,30833530-30834273,30834484-30834742,
           30834821-30835041,30835127-30835375,30835460-30835595,
           30835864-30836207,30836589-30836758,30837080-30837185,
           30837267-30837330,30838462-30838616
          Length = 925

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 457 AKFVQAWFMYPSVYFI*EINISPTIFL 377
           A F Q W+ YP +YFI  +  SPT F+
Sbjct: 700 AVFSQFWYWYPLLYFI-SLAFSPTAFI 725


>05_07_0196 +
           28352320-28352522,28352679-28352808,28353774-28353851,
           28355562-28355664,28356109-28356302,28356501-28356518
          Length = 241

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +2

Query: 20  FDNYVKPLRLYLTKYRE 70
           F++YV+PL+LYL  YRE
Sbjct: 95  FEDYVEPLKLYLRLYRE 111


>02_05_0591 - 30183105-30183869
          Length = 254

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +2

Query: 20  FDNYVKPLRLYLTKYRE 70
           FD+YV+PL +YL +YRE
Sbjct: 105 FDDYVEPLGVYLHRYRE 121


>03_04_0055 + 16891212-16891848,16893166-16893206
          Length = 225

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +2

Query: 20  FDNYVKPLRLYLTKYREI 73
           F++YV PL+ YL K+REI
Sbjct: 97  FEDYVDPLKHYLHKFREI 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,391,639
Number of Sequences: 37544
Number of extensions: 297280
Number of successful extensions: 555
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)