Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0488
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29996| Best HMM Match : Bombolitin (HMM E-Value=4.4)                30   2.3  
SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_29996| Best HMM Match : Bombolitin (HMM E-Value=4.4)
          Length = 316

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = -1

Query: 204 ERWIQFVYRFHFR----LKHRPCRLRYIKLWSCS 115
           E W+QF+Y+F  R     +   CR+R++  W  S
Sbjct: 8   EGWLQFLYKFALREFDFWEPNSCRIRFVDFWKFS 41


>SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1576

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/57 (22%), Positives = 24/57 (42%)
 Frame = +3

Query: 72   LLCHQPYLQVTINKLNKTIVLYSEDGTACVSNENEIDTQTESTVLYVPSTYPKVVEE 242
            L C +P   +   + NK   ++  DG  C +  ++ D  T     Y+     + V+E
Sbjct: 1294 LCCTRPRCDIAYMENNKCFAVHCNDGVQCQTAAHQADDNTNVKFAYMDRHQAQPVKE 1350


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,926,423
Number of Sequences: 59808
Number of extensions: 385864
Number of successful extensions: 764
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)