Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0488
         (750 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59710-1|CAA42230.1|  205|Homo sapiens CAAT-box DNA binding prot...    32   1.9  
L06145-1|AAA59930.1|  207|Homo sapiens CCAAT-box DNA binding pro...    32   1.9  
BC007035-1|AAH07035.1|  207|Homo sapiens nuclear transcription f...    32   1.9  
BC005317-1|AAH05317.1|  207|Homo sapiens nuclear transcription f...    32   1.9  
BC005316-1|AAH05316.1|  207|Homo sapiens nuclear transcription f...    32   1.9  

>X59710-1|CAA42230.1|  205|Homo sapiens CAAT-box DNA binding protein
           subunit B  (NF-YB) protein.
          Length = 205

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = +2

Query: 20  FDNYVKPLRLYLTKYRE 70
           FD+YV+PL+LYL K+RE
Sbjct: 125 FDSYVEPLKLYLQKFRE 141


>L06145-1|AAA59930.1|  207|Homo sapiens CCAAT-box DNA binding
           protein subunit NF-YB. protein.
          Length = 207

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = +2

Query: 20  FDNYVKPLRLYLTKYRE 70
           FD+YV+PL+LYL K+RE
Sbjct: 127 FDSYVEPLKLYLQKFRE 143


>BC007035-1|AAH07035.1|  207|Homo sapiens nuclear transcription
           factor Y, beta protein.
          Length = 207

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = +2

Query: 20  FDNYVKPLRLYLTKYRE 70
           FD+YV+PL+LYL K+RE
Sbjct: 127 FDSYVEPLKLYLQKFRE 143


>BC005317-1|AAH05317.1|  207|Homo sapiens nuclear transcription
           factor Y, beta protein.
          Length = 207

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = +2

Query: 20  FDNYVKPLRLYLTKYRE 70
           FD+YV+PL+LYL K+RE
Sbjct: 127 FDSYVEPLKLYLQKFRE 143


>BC005316-1|AAH05316.1|  207|Homo sapiens nuclear transcription
           factor Y, beta protein.
          Length = 207

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = +2

Query: 20  FDNYVKPLRLYLTKYRE 70
           FD+YV+PL+LYL K+RE
Sbjct: 127 FDSYVEPLKLYLQKFRE 143


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,551,262
Number of Sequences: 237096
Number of extensions: 1739001
Number of successful extensions: 2833
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2833
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)